Wall clock time and date at job start Sun Mar 29 2020 22:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 N 1.46497 * 109.47139 * 119.99832 * 2 1 3 5 5 N 1.40590 * 127.38213 * 304.74974 * 4 2 1 6 6 N 1.28913 * 106.81598 * 180.26445 * 5 4 2 7 7 N 1.28424 * 110.31659 * 359.77176 * 6 5 4 8 8 C 1.31479 * 110.50844 * 359.97438 * 7 6 5 9 9 N 1.38373 * 126.43848 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99758 * 57.41896 * 9 8 7 11 11 C 1.46897 * 111.00410 * 293.46716 * 9 8 7 12 12 H 1.09003 * 109.47019 * 309.99866 * 11 9 8 13 13 C 1.53002 * 109.47370 * 69.99712 * 11 9 8 14 14 C 1.50697 * 109.47442 * 189.99986 * 11 9 8 15 15 H 1.08002 * 119.99974 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00355 * 179.97438 * 14 11 9 17 17 N 1.31511 * 120.00541 * 179.97438 * 16 14 11 18 18 Si 1.86807 * 119.99956 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47061 * 89.99990 * 18 16 14 20 20 H 1.48496 * 109.47121 * 210.00201 * 18 16 14 21 21 H 1.48496 * 109.46912 * 329.99825 * 18 16 14 22 22 H 1.08998 * 109.47387 * 300.00222 * 1 2 3 23 23 H 1.09005 * 109.46998 * 60.00072 * 1 2 3 24 24 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47441 * 240.00266 * 2 1 3 26 26 H 1.08998 * 109.47106 * 59.99606 * 3 2 1 27 27 H 1.09000 * 109.47307 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47061 * 299.99889 * 3 2 1 29 29 H 1.08996 * 109.47396 * 302.75437 * 10 9 8 30 30 H 1.08998 * 109.46831 * 62.75962 * 10 9 8 31 31 H 1.09006 * 109.47262 * 182.75130 * 10 9 8 32 32 H 1.09003 * 109.46924 * 60.00095 * 13 11 9 33 33 H 1.08996 * 109.47547 * 180.02562 * 13 11 9 34 34 H 1.09002 * 109.46704 * 300.00464 * 13 11 9 35 35 H 0.96994 * 120.00425 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7025 -0.4041 2.5358 6 7 2.3526 -1.2487 3.2611 7 7 3.0399 -2.0386 2.5176 8 6 2.8678 -1.7425 1.2482 9 7 3.4512 -2.3820 0.1686 10 6 3.1299 -3.8154 0.1693 11 6 4.9045 -2.1683 0.1526 12 1 5.1166 -1.1046 0.2606 13 6 5.5457 -2.9363 1.3102 14 6 5.4707 -2.6632 -1.1533 15 1 4.8164 -3.0939 -1.8969 16 6 6.8239 -2.5664 -1.3990 17 7 7.3181 -2.9987 -2.5384 18 14 7.9557 -1.8222 -0.1126 19 1 8.4486 -2.8921 0.7915 20 1 9.1091 -1.1719 -0.7848 21 1 7.2091 -0.8109 0.6781 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 3.4575 -4.2607 1.1086 30 1 2.0532 -3.9463 0.0611 31 1 3.6404 -4.3026 -0.6614 32 1 5.3337 -4.0000 1.2021 33 1 6.6240 -2.7775 1.2986 34 1 5.1362 -2.5783 2.2547 35 1 8.2700 -2.9302 -2.7113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333660114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:12 Heat of formation + Delta-G solvation = 135.114148 kcal Electronic energy + Delta-G solvation = -18042.526137 eV Core-core repulsion = 15307.342187 eV Total energy + Delta-G solvation = -2735.183950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.60525 -37.83568 -36.46626 -33.01810 -31.58142 -31.08460 -29.62677 -27.41725 -25.92439 -25.32809 -24.17635 -22.15532 -20.91794 -19.81856 -17.13180 -16.72972 -16.31264 -15.72198 -15.03487 -14.73720 -13.86032 -13.76722 -13.50793 -13.21688 -12.91915 -12.41298 -12.36124 -12.22160 -11.99214 -11.80116 -11.66448 -11.54565 -11.22537 -11.03278 -10.74301 -10.55965 -10.19738 -10.12776 -9.69096 -9.57910 -9.26176 -8.77182 -8.23700 -6.23608 -4.25086 1.35074 2.05793 2.65458 3.18721 3.29685 3.30207 4.08103 4.26198 4.42204 4.77654 4.93241 5.04563 5.07768 5.30147 5.40917 5.52001 5.59020 5.68276 5.77095 5.86371 6.00483 6.03478 6.10796 6.13059 6.25724 6.36876 6.49224 6.52423 6.76480 6.98222 7.30295 7.39400 7.68022 8.37512 8.79529 8.87471 9.35954 10.88201 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027495 B = 0.008425 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.138760 B = 3322.614555 C = 3541.547475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.363 5.363 5 N -0.099 5.099 6 N -0.050 5.050 7 N -0.356 5.356 8 C 0.430 3.570 9 N -0.459 5.459 10 C 0.038 3.962 11 C 0.195 3.805 12 H 0.038 0.962 13 C -0.192 4.192 14 C -0.511 4.511 15 H 0.088 0.912 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.883 3.117 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.270 1.270 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 4.865 2.988 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 C -0.220 4.220 4 N -0.162 5.162 5 N -0.086 5.086 6 N -0.046 5.046 7 N -0.213 5.213 8 C 0.064 3.936 9 N -0.187 5.187 10 C -0.109 4.109 11 C 0.089 3.911 12 H 0.056 0.944 13 C -0.250 4.250 14 C -0.549 4.549 15 H 0.106 0.894 16 C -0.125 4.125 17 N -0.528 5.528 18 Si 0.713 3.287 19 H -0.202 1.202 20 H -0.221 1.221 21 H -0.196 1.196 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.143 0.857 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.878 5.242 3.786 12.654 hybrid contribution 1.144 0.127 0.278 1.184 sum -9.733 5.369 4.064 11.835 Atomic orbital electron populations 1.22114 0.92741 1.03148 1.03581 1.21667 0.95631 0.94191 0.83903 1.22156 1.02534 0.93850 1.03410 1.51813 1.32638 1.23821 1.07964 1.82388 1.21674 1.20639 0.83856 1.77864 1.03140 0.99850 1.23750 1.75002 1.22257 1.23953 1.00106 1.23656 0.90369 0.88322 0.91209 1.59542 1.15077 1.13388 1.30653 1.22408 1.00163 0.84836 1.03463 1.19902 0.78345 0.96561 0.96325 0.94388 1.22901 1.00498 1.02164 0.99450 1.20722 0.93198 1.41694 0.99317 0.89443 1.24810 0.97727 0.94657 0.95261 1.69839 1.13648 1.46068 1.23216 0.86934 0.80574 0.79818 0.81364 1.20231 1.22138 1.19550 0.91207 0.90063 0.91943 0.85671 0.91444 0.91530 0.89963 0.93554 0.92880 0.87959 0.91969 0.93466 0.92622 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.43 37.15 0.35 -1.24 16 2 C 0.15 1.91 3.77 -67.93 -0.26 1.66 16 3 C -0.16 -1.85 9.52 37.16 0.35 -1.49 16 4 N -0.36 -6.10 3.34 -55.35 -0.18 -6.29 16 5 N -0.10 -1.77 13.82 60.35 0.83 -0.94 16 6 N -0.05 -0.99 13.38 60.35 0.81 -0.18 16 7 N -0.36 -7.22 9.84 30.10 0.30 -6.93 16 8 C 0.43 8.24 6.33 -320.41 -2.03 6.21 16 9 N -0.46 -9.03 4.49 -176.43 -0.79 -9.82 16 10 C 0.04 0.68 8.57 60.06 0.51 1.19 16 11 C 0.19 4.41 1.87 -68.87 -0.13 4.28 16 12 H 0.04 0.92 7.11 -51.93 -0.37 0.55 16 13 C -0.19 -4.22 7.86 37.16 0.29 -3.93 16 14 C -0.51 -13.16 8.45 -34.44 -0.29 -13.45 16 15 H 0.09 2.40 7.39 -52.49 -0.39 2.01 16 16 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 17 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 18 Si 0.88 21.22 24.37 -169.99 -4.14 17.08 16 19 H -0.28 -6.52 6.87 56.52 0.39 -6.14 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.13 1.66 7.85 -51.93 -0.41 1.25 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.82 6.48 -51.93 -0.34 0.49 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.89 6.70 -51.93 -0.35 1.54 16 32 H 0.06 1.31 6.48 -51.93 -0.34 0.97 16 33 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 34 H 0.05 1.20 5.99 -51.93 -0.31 0.89 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -29.19 281.53 -4.26 -33.45 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.81 Total: -1.11 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.29 Total: -4.74 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 1.73 Total: -48.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.19 -4.26 -33.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333660114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.567 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds