Wall clock time and date at job start Sun Mar 29 2020 22:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 N 1.46497 * 109.47139 * 119.99832 * 2 1 3 5 5 N 1.40590 * 127.38213 * 304.74974 * 4 2 1 6 6 N 1.28913 * 106.81598 * 180.26445 * 5 4 2 7 7 N 1.28424 * 110.31659 * 359.77176 * 6 5 4 8 8 C 1.31479 * 110.50844 * 359.97438 * 7 6 5 9 9 N 1.38373 * 126.43848 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99758 * 57.41896 * 9 8 7 11 11 C 1.46897 * 111.00410 * 293.46716 * 9 8 7 12 12 H 1.09003 * 109.47019 * 309.99866 * 11 9 8 13 13 C 1.53002 * 109.47370 * 69.99712 * 11 9 8 14 14 C 1.50697 * 109.47442 * 189.99986 * 11 9 8 15 15 H 1.08002 * 119.99974 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00355 * 179.97438 * 14 11 9 17 17 N 1.31511 * 120.00541 * 179.97438 * 16 14 11 18 18 Si 1.86807 * 119.99956 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47061 * 89.99990 * 18 16 14 20 20 H 1.48496 * 109.47121 * 210.00201 * 18 16 14 21 21 H 1.48496 * 109.46912 * 329.99825 * 18 16 14 22 22 H 1.08998 * 109.47387 * 300.00222 * 1 2 3 23 23 H 1.09005 * 109.46998 * 60.00072 * 1 2 3 24 24 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47441 * 240.00266 * 2 1 3 26 26 H 1.08998 * 109.47106 * 59.99606 * 3 2 1 27 27 H 1.09000 * 109.47307 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47061 * 299.99889 * 3 2 1 29 29 H 1.08996 * 109.47396 * 302.75437 * 10 9 8 30 30 H 1.08998 * 109.46831 * 62.75962 * 10 9 8 31 31 H 1.09006 * 109.47262 * 182.75130 * 10 9 8 32 32 H 1.09003 * 109.46924 * 60.00095 * 13 11 9 33 33 H 1.08996 * 109.47547 * 180.02562 * 13 11 9 34 34 H 1.09002 * 109.46704 * 300.00464 * 13 11 9 35 35 H 0.96994 * 120.00425 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7025 -0.4041 2.5358 6 7 2.3526 -1.2487 3.2611 7 7 3.0399 -2.0386 2.5176 8 6 2.8678 -1.7425 1.2482 9 7 3.4512 -2.3820 0.1686 10 6 3.1299 -3.8154 0.1693 11 6 4.9045 -2.1683 0.1526 12 1 5.1166 -1.1046 0.2606 13 6 5.5457 -2.9363 1.3102 14 6 5.4707 -2.6632 -1.1533 15 1 4.8164 -3.0939 -1.8969 16 6 6.8239 -2.5664 -1.3990 17 7 7.3181 -2.9987 -2.5384 18 14 7.9557 -1.8222 -0.1126 19 1 8.4486 -2.8921 0.7915 20 1 9.1091 -1.1719 -0.7848 21 1 7.2091 -0.8109 0.6781 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 3.4575 -4.2607 1.1086 30 1 2.0532 -3.9463 0.0611 31 1 3.6404 -4.3026 -0.6614 32 1 5.3337 -4.0000 1.2021 33 1 6.6240 -2.7775 1.2986 34 1 5.1362 -2.5783 2.2547 35 1 8.2700 -2.9302 -2.7113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333660114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:12 Heat of formation + Delta-G solvation = 116.066085 kcal Electronic energy + Delta-G solvation = -18043.352123 eV Core-core repulsion = 15307.342187 eV Total energy + Delta-G solvation = -2736.009936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.06380 -39.47574 -37.61074 -34.95879 -32.88381 -32.72633 -31.29008 -28.27735 -27.44845 -27.23402 -25.54975 -23.78249 -22.21585 -21.39103 -18.88699 -18.15236 -17.89283 -17.34376 -16.79182 -15.84528 -15.52722 -15.41055 -14.65972 -14.53750 -14.35828 -14.18448 -13.78162 -13.45380 -13.31878 -13.21750 -13.17302 -12.88179 -12.64090 -12.51317 -12.16388 -12.04814 -11.99930 -11.57192 -11.39263 -11.17182 -11.12483 -10.82589 -9.85811 -8.32966 -6.36657 -0.09025 0.73283 1.14224 1.27736 1.33775 1.40252 2.26301 2.59877 3.01099 3.24030 3.58189 3.83431 4.00217 4.11681 4.22147 4.32063 4.37189 4.47129 4.54112 4.61035 4.64471 4.68874 4.75263 4.83615 4.91018 5.06408 5.15031 5.18632 5.21289 5.28078 5.44789 5.67445 5.96446 6.38875 6.69047 7.27138 7.40036 8.81956 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027495 B = 0.008425 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.138760 B = 3322.614555 C = 3541.547475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 C -0.156 4.156 4 N -0.350 5.350 5 N -0.089 5.089 6 N -0.067 5.067 7 N -0.371 5.371 8 C 0.417 3.583 9 N -0.458 5.458 10 C 0.040 3.960 11 C 0.202 3.798 12 H 0.025 0.975 13 C -0.185 4.185 14 C -0.501 4.501 15 H 0.064 0.936 16 C 0.033 3.967 17 N -0.932 5.932 18 Si 0.931 3.069 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.265 1.265 22 H 0.068 0.932 23 H 0.114 0.886 24 H 0.056 0.944 25 H 0.122 0.878 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 5.791 3.476 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.034 3.966 3 C -0.214 4.214 4 N -0.149 5.149 5 N -0.076 5.076 6 N -0.063 5.063 7 N -0.229 5.229 8 C 0.050 3.950 9 N -0.184 5.184 10 C -0.106 4.106 11 C 0.095 3.905 12 H 0.043 0.957 13 C -0.244 4.244 14 C -0.539 4.539 15 H 0.082 0.918 16 C -0.166 4.166 17 N -0.571 5.571 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.190 1.190 22 H 0.087 0.913 23 H 0.132 0.868 24 H 0.076 0.924 25 H 0.140 0.860 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.134 0.866 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.082 6.176 4.278 14.227 hybrid contribution 1.380 -0.128 0.066 1.388 sum -10.701 6.049 4.343 13.037 Atomic orbital electron populations 1.22105 0.90129 1.03327 1.05140 1.22156 0.97701 0.94595 0.82172 1.22166 1.01046 0.93042 1.05182 1.52143 1.31457 1.22819 1.08502 1.82317 1.21049 1.19983 0.84282 1.77853 1.03893 1.00414 1.24098 1.74901 1.22728 1.24587 1.00669 1.23499 0.91427 0.89287 0.90745 1.59403 1.13307 1.14569 1.31150 1.22431 1.01749 0.83578 1.02876 1.19610 0.80369 0.95574 0.94935 0.95666 1.22810 0.99803 1.02493 0.99265 1.20843 0.92821 1.40295 0.99969 0.91817 1.25427 0.99220 0.95296 0.96690 1.69943 1.14082 1.48044 1.25044 0.86133 0.78987 0.79424 0.79475 1.19411 1.22084 1.19005 0.91320 0.86782 0.92450 0.86019 0.91276 0.93784 0.86599 0.93606 0.90252 0.89100 0.91304 0.94257 0.92076 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.43 71.98 0.68 -1.87 16 2 C 0.13 3.17 3.77 44.99 0.17 3.34 16 3 C -0.16 -3.21 9.52 71.98 0.69 -2.52 16 4 N -0.35 -11.17 3.34 -329.04 -1.10 -12.26 16 5 N -0.09 -3.05 13.82 37.02 0.51 -2.54 16 6 N -0.07 -2.54 13.38 37.02 0.50 -2.05 16 7 N -0.37 -14.60 9.84 -58.70 -0.58 -15.18 16 8 C 0.42 15.41 6.33 260.65 1.65 17.06 16 9 N -0.46 -17.54 4.49 -712.10 -3.20 -20.74 16 10 C 0.04 1.38 8.57 127.69 1.09 2.48 16 11 C 0.20 9.02 1.87 44.17 0.08 9.11 16 12 H 0.03 1.21 7.11 -2.39 -0.02 1.19 16 13 C -0.19 -7.94 7.86 71.98 0.57 -7.37 16 14 C -0.50 -25.86 8.45 25.60 0.22 -25.64 16 15 H 0.06 3.55 7.39 -2.91 -0.02 3.53 16 16 C 0.03 1.80 5.45 84.65 0.46 2.26 16 17 N -0.93 -54.01 13.96 21.45 0.30 -53.71 16 18 Si 0.93 43.33 24.37 68.60 1.67 45.01 16 19 H -0.27 -12.07 6.87 99.48 0.68 -11.39 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.02 6.53 99.48 0.65 -11.37 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.12 3.00 7.85 -2.39 -0.02 2.98 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.05 1.57 6.48 -2.39 -0.02 1.55 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 3.32 6.70 -2.38 -0.02 3.30 16 32 H 0.07 2.82 6.48 -2.39 -0.02 2.80 16 33 H 0.04 1.73 3.27 -2.39 -0.01 1.73 16 34 H 0.06 2.55 5.99 -2.39 -0.01 2.54 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -61.61 281.53 4.72 -56.89 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.01 Total: 7.74 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.61 Total: -3.16 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.57 Total: -106.48 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.67 Total: 45.01 kcal Total: -61.61 4.72 -56.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333660114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.961 kcal (2) G-P(sol) polarization free energy of solvation -61.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds