Wall clock time and date at job start Sun Mar 29 2020 22:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 H 1.08998 * 109.47245 * 177.96507 * 3 2 1 5 5 C 1.50704 * 109.46911 * 57.96524 * 3 2 1 6 6 H 1.08000 * 119.99869 * 239.99821 * 5 3 2 7 7 C 1.37876 * 119.99693 * 60.00317 * 5 3 2 8 8 N 1.31511 * 120.00342 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47020 * 119.99936 * 9 7 5 12 12 H 1.48496 * 109.47371 * 239.99971 * 9 7 5 13 13 N 1.46899 * 109.47240 * 297.96731 * 3 2 1 14 14 C 1.46901 * 110.99949 * 273.75039 * 13 3 2 15 15 C 1.52993 * 109.47234 * 174.95313 * 14 13 3 16 16 C 1.50700 * 109.47413 * 179.97438 * 15 14 13 17 17 N 1.30280 * 126.28156 * 90.02285 * 16 15 14 18 18 N 1.28661 * 109.37853 * 179.97438 * 17 16 15 19 19 C 1.30274 * 109.38595 * 359.97438 * 18 17 16 20 20 C 1.50697 * 126.28423 * 180.02562 * 19 18 17 21 21 O 1.34359 * 107.43434 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47159 * 54.44864 * 1 2 3 23 23 H 1.08997 * 109.46884 * 174.44964 * 1 2 3 24 24 H 1.09000 * 109.46671 * 294.45280 * 1 2 3 25 25 H 1.09007 * 109.47128 * 240.00051 * 2 1 3 26 26 H 1.08996 * 109.47252 * 120.00050 * 2 1 3 27 27 H 0.96998 * 120.00001 * 180.02562 * 8 7 5 28 28 H 1.00895 * 111.00103 * 149.79861 * 13 3 2 29 29 H 1.09003 * 109.47432 * 54.94952 * 14 13 3 30 30 H 1.08997 * 109.47083 * 294.95347 * 14 13 3 31 31 H 1.09002 * 109.47475 * 59.99973 * 15 14 13 32 32 H 1.08997 * 109.47113 * 300.00015 * 15 14 13 33 33 H 1.08999 * 109.47130 * 89.97755 * 20 19 18 34 34 H 1.08999 * 109.47188 * 209.97708 * 20 19 18 35 35 H 1.09004 * 109.47408 * 329.97991 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1673 1.2045 6 1 0.8799 3.0441 1.0743 7 6 1.7879 1.7111 2.4727 8 7 2.5389 0.6433 2.6312 9 14 1.1152 2.6100 3.9657 10 1 0.3053 3.7723 3.5204 11 1 0.2633 1.6864 4.7571 12 1 2.2429 3.0861 4.8065 13 7 1.5909 2.1207 -1.2232 14 6 2.5281 1.8858 -2.3298 15 6 1.9657 2.4995 -3.6134 16 6 2.9274 2.2590 -4.7485 17 7 2.9335 1.2313 -5.5492 18 7 3.8918 1.3574 -6.3984 19 6 4.5294 2.4700 -6.1688 20 6 5.7156 2.9930 -6.9372 21 8 3.9354 3.0655 -5.1211 22 1 -0.3633 0.5975 -0.8361 23 1 -0.3633 -1.0228 -0.0994 24 1 -0.3633 0.4254 0.9355 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.7433 0.3222 3.5234 28 1 1.4617 3.1083 -1.0624 29 1 2.6644 0.8133 -2.4691 30 1 3.4880 2.3467 -2.0970 31 1 1.8295 3.5719 -3.4742 32 1 1.0058 2.0386 -3.8463 33 1 5.3684 3.6139 -7.7631 34 1 6.3441 3.5881 -6.2746 35 1 6.2923 2.1555 -7.3298 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334280111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:22 Heat of formation + Delta-G solvation = 24.869977 kcal Electronic energy + Delta-G solvation = -16780.650257 eV Core-core repulsion = 14008.393009 eV Total energy + Delta-G solvation = -2772.257247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.19901 -36.72653 -36.13717 -34.24998 -32.65128 -31.25164 -29.80854 -27.52460 -25.88864 -23.50598 -23.02668 -22.57752 -21.49905 -19.07724 -17.41543 -17.08885 -16.38381 -15.29794 -15.15264 -14.67490 -14.35094 -13.79458 -13.41013 -13.32027 -13.01826 -12.83214 -12.40752 -12.21385 -11.90935 -11.84049 -11.59449 -11.15448 -10.96575 -10.82825 -10.73626 -10.40113 -10.08531 -9.82273 -9.43594 -9.33242 -8.80480 -8.51471 -7.37978 -6.05224 -4.11112 1.14616 2.25303 2.39323 3.26348 3.34941 3.38006 3.79565 4.33546 4.39397 4.76032 4.98782 5.10014 5.16838 5.26090 5.30740 5.35705 5.41512 5.64904 5.69465 5.82871 6.17938 6.27481 6.52964 6.71063 6.84492 7.22876 7.25388 7.46833 7.70903 7.75452 7.80583 8.19732 8.30333 8.32596 8.57888 8.97071 9.53876 11.00887 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.004525 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.840444 B = 6185.878413 C = 6429.374466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.065 3.935 15 C -0.023 4.023 16 C 0.181 3.819 17 N -0.289 5.289 18 N -0.290 5.290 19 C 0.148 3.852 20 C -0.055 4.055 21 O -0.227 6.227 22 H 0.047 0.953 23 H 0.013 0.987 24 H 0.051 0.949 25 H 0.011 0.989 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 5.694 -13.955 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.313 5.313 14 C -0.066 4.066 15 C -0.062 4.062 16 C -0.030 4.030 17 N -0.135 5.135 18 N -0.138 5.138 19 C -0.063 4.063 20 C -0.113 4.113 21 O -0.106 6.106 22 H 0.066 0.934 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.070 3.934 -14.528 15.361 hybrid contribution 0.811 2.018 1.654 2.733 sum 3.881 5.952 -12.874 14.705 Atomic orbital electron populations 1.21435 0.97376 0.97264 1.01554 1.21438 0.95237 0.98054 0.99452 1.19147 0.93404 0.91743 0.84804 0.98107 1.21199 1.31762 1.12043 0.90252 0.92124 1.24887 0.95039 0.95002 0.98906 1.69898 1.37331 1.23055 1.22361 0.86511 0.78728 0.79773 0.82828 1.19737 1.20963 1.21168 1.60646 1.46953 1.16357 1.07394 1.21840 0.94069 1.00788 0.89887 1.20346 0.94506 1.03745 0.87651 1.28261 0.89588 0.86029 0.99096 1.74424 1.15101 1.20609 1.03390 1.74360 1.03980 1.15690 1.19777 1.27952 0.99216 0.90877 0.88281 1.20300 0.89885 1.02888 0.98229 1.84792 1.37893 1.47200 1.40731 0.93390 0.96767 0.92956 0.97038 0.89608 0.92958 0.85031 0.90758 0.95856 0.88774 0.86299 0.88558 0.88984 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.46 37.16 0.35 -2.30 16 2 C -0.10 -2.49 5.58 -26.73 -0.15 -2.64 16 3 C 0.22 5.24 2.30 -68.86 -0.16 5.08 16 4 H 0.00 0.03 7.84 -51.93 -0.41 -0.37 16 5 C -0.51 -13.40 7.34 -34.44 -0.25 -13.66 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.82 11.34 55.43 0.63 -24.19 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -13.47 5.51 -107.95 -0.59 -14.06 16 14 C 0.07 1.12 5.43 -3.83 -0.02 1.10 16 15 C -0.02 -0.32 6.14 -27.89 -0.17 -0.49 16 16 C 0.18 2.74 7.73 -12.94 -0.10 2.64 16 17 N -0.29 -4.92 12.22 32.55 0.40 -4.52 16 18 N -0.29 -4.57 12.22 32.55 0.40 -4.17 16 19 C 0.15 1.86 8.48 -12.94 -0.11 1.75 16 20 C -0.06 -0.36 10.51 36.00 0.38 0.01 16 21 O -0.23 -3.18 10.87 5.39 0.06 -3.12 16 22 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 25 H 0.01 0.25 7.43 -51.92 -0.39 -0.13 16 26 H 0.09 2.30 6.12 -51.93 -0.32 1.98 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.24 8.25 -39.29 -0.32 5.92 16 29 H 0.07 1.39 7.40 -51.93 -0.38 1.01 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -30.37 296.11 -5.08 -35.45 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.08 Total: 1.31 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.33 Total: -6.89 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.83 Total: -46.95 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: 0.06 Total: -3.12 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.37 -5.08 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334280111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.322 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds