Wall clock time and date at job start Sun Mar 29 2020 22:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 H 1.08998 * 109.47245 * 177.96507 * 3 2 1 5 5 C 1.50704 * 109.46911 * 57.96524 * 3 2 1 6 6 H 1.08000 * 119.99869 * 239.99821 * 5 3 2 7 7 C 1.37876 * 119.99693 * 60.00317 * 5 3 2 8 8 N 1.31511 * 120.00342 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47020 * 119.99936 * 9 7 5 12 12 H 1.48496 * 109.47371 * 239.99971 * 9 7 5 13 13 N 1.46899 * 109.47240 * 297.96731 * 3 2 1 14 14 C 1.46901 * 110.99949 * 273.75039 * 13 3 2 15 15 C 1.52993 * 109.47234 * 174.95313 * 14 13 3 16 16 C 1.50700 * 109.47413 * 179.97438 * 15 14 13 17 17 N 1.30280 * 126.28156 * 90.02285 * 16 15 14 18 18 N 1.28661 * 109.37853 * 179.97438 * 17 16 15 19 19 C 1.30274 * 109.38595 * 359.97438 * 18 17 16 20 20 C 1.50697 * 126.28423 * 180.02562 * 19 18 17 21 21 O 1.34359 * 107.43434 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47159 * 54.44864 * 1 2 3 23 23 H 1.08997 * 109.46884 * 174.44964 * 1 2 3 24 24 H 1.09000 * 109.46671 * 294.45280 * 1 2 3 25 25 H 1.09007 * 109.47128 * 240.00051 * 2 1 3 26 26 H 1.08996 * 109.47252 * 120.00050 * 2 1 3 27 27 H 0.96998 * 120.00001 * 180.02562 * 8 7 5 28 28 H 1.00895 * 111.00103 * 149.79861 * 13 3 2 29 29 H 1.09003 * 109.47432 * 54.94952 * 14 13 3 30 30 H 1.08997 * 109.47083 * 294.95347 * 14 13 3 31 31 H 1.09002 * 109.47475 * 59.99973 * 15 14 13 32 32 H 1.08997 * 109.47113 * 300.00015 * 15 14 13 33 33 H 1.08999 * 109.47130 * 89.97755 * 20 19 18 34 34 H 1.08999 * 109.47188 * 209.97708 * 20 19 18 35 35 H 1.09004 * 109.47408 * 329.97991 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1673 1.2045 6 1 0.8799 3.0441 1.0743 7 6 1.7879 1.7111 2.4727 8 7 2.5389 0.6433 2.6312 9 14 1.1152 2.6100 3.9657 10 1 0.3053 3.7723 3.5204 11 1 0.2633 1.6864 4.7571 12 1 2.2429 3.0861 4.8065 13 7 1.5909 2.1207 -1.2232 14 6 2.5281 1.8858 -2.3298 15 6 1.9657 2.4995 -3.6134 16 6 2.9274 2.2590 -4.7485 17 7 2.9335 1.2313 -5.5492 18 7 3.8918 1.3574 -6.3984 19 6 4.5294 2.4700 -6.1688 20 6 5.7156 2.9930 -6.9372 21 8 3.9354 3.0655 -5.1211 22 1 -0.3633 0.5975 -0.8361 23 1 -0.3633 -1.0228 -0.0994 24 1 -0.3633 0.4254 0.9355 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.7433 0.3222 3.5234 28 1 1.4617 3.1083 -1.0624 29 1 2.6644 0.8133 -2.4691 30 1 3.4880 2.3467 -2.0970 31 1 1.8295 3.5719 -3.4742 32 1 1.0058 2.0386 -3.8463 33 1 5.3684 3.6139 -7.7631 34 1 6.3441 3.5881 -6.2746 35 1 6.2923 2.1555 -7.3298 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334280111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:22 Heat of formation + Delta-G solvation = 0.558251 kcal Electronic energy + Delta-G solvation = -16781.704492 eV Core-core repulsion = 14008.393009 eV Total energy + Delta-G solvation = -2773.311483 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.29015 -38.41599 -37.25174 -35.71829 -34.03928 -32.88159 -31.19415 -28.80462 -27.57743 -25.22080 -24.54434 -23.60023 -22.75439 -20.96323 -18.59929 -18.39986 -18.00848 -16.96796 -16.53399 -15.97722 -15.69031 -15.35221 -14.83773 -14.57876 -14.13212 -13.85041 -13.77330 -13.55217 -13.49575 -13.06632 -12.97841 -12.83501 -12.63841 -12.43034 -12.35052 -11.98645 -11.85720 -11.64048 -11.30752 -10.79101 -10.55579 -10.48645 -9.09196 -8.08827 -6.21143 0.09582 1.24586 1.28513 1.42950 1.46129 1.56346 2.43834 2.81899 3.20936 3.38959 3.71652 3.85115 4.03291 4.16881 4.33405 4.40339 4.56829 4.61321 4.65275 4.72191 4.81993 4.89430 4.92414 4.98706 5.05131 5.31499 5.40430 5.57085 5.73064 5.81041 5.89515 6.27316 6.43536 6.76897 7.03571 7.22336 7.47949 8.96899 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.004525 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.840444 B = 6185.878413 C = 6429.374466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.036 1.036 5 C -0.521 4.521 6 H 0.065 0.935 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.956 3.044 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.072 3.928 15 C -0.009 4.009 16 C 0.175 3.825 17 N -0.320 5.320 18 N -0.331 5.331 19 C 0.165 3.835 20 C -0.056 4.056 21 O -0.231 6.231 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.260 0.740 28 H 0.341 0.659 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 7.317 -14.865 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.113 3.887 4 H -0.019 1.019 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.305 5.305 14 C -0.059 4.059 15 C -0.048 4.048 16 C -0.037 4.037 17 N -0.166 5.166 18 N -0.178 5.178 19 C -0.046 4.046 20 C -0.113 4.113 21 O -0.111 6.111 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.818 5.562 -15.470 16.680 hybrid contribution 0.991 1.526 1.845 2.591 sum 3.809 7.088 -13.626 15.824 Atomic orbital electron populations 1.21305 0.95659 0.98523 1.00951 1.21333 0.96656 0.97759 0.98197 1.18924 0.91095 0.92291 0.86416 1.01851 1.21487 1.31392 1.12093 0.90995 0.91709 1.25650 0.95348 0.95678 1.01688 1.70041 1.38578 1.24457 1.22794 0.85536 0.78031 0.78818 0.79431 1.18646 1.21029 1.21114 1.60506 1.47175 1.16643 1.06137 1.21727 0.93607 0.99878 0.90662 1.20196 0.94105 1.05138 0.85315 1.28313 0.90122 0.85999 0.99304 1.74342 1.16224 1.21675 1.04342 1.74299 1.04998 1.17673 1.20784 1.29151 0.98948 0.89557 0.86980 1.20727 0.87980 1.03966 0.98668 1.84812 1.37792 1.47203 1.41296 0.92217 0.94952 0.94778 0.96509 0.92625 0.93103 0.84095 0.92745 0.96440 0.86053 0.85591 0.85905 0.86933 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.46 71.98 0.68 -4.00 16 2 C -0.10 -4.91 5.58 30.60 0.17 -4.74 16 3 C 0.22 10.83 2.30 44.17 0.10 10.93 16 4 H -0.04 -2.00 7.84 -2.39 -0.02 -2.02 16 5 C -0.52 -27.11 7.34 25.60 0.19 -26.92 16 6 H 0.06 3.26 7.60 -2.91 -0.02 3.23 16 7 C 0.02 0.83 5.30 84.65 0.45 1.28 16 8 N -0.92 -52.31 11.34 21.45 0.24 -52.07 16 9 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.67 -26.09 5.51 -495.45 -2.73 -28.82 16 14 C 0.07 2.46 5.43 86.30 0.47 2.93 16 15 C -0.01 -0.23 6.14 29.85 0.18 -0.05 16 16 C 0.17 5.13 7.73 88.34 0.68 5.81 16 17 N -0.32 -10.82 12.22 -165.49 -2.02 -12.85 16 18 N -0.33 -10.23 12.22 -165.51 -2.02 -12.25 16 19 C 0.16 3.87 8.48 88.34 0.75 4.62 16 20 C -0.06 -0.57 10.51 71.24 0.75 0.18 16 21 O -0.23 -6.12 10.87 -3.63 -0.04 -6.16 16 22 H 0.06 2.44 7.50 -2.39 -0.02 2.42 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.03 1.59 7.37 -2.39 -0.02 1.57 16 25 H 0.02 0.76 7.43 -2.38 -0.02 0.75 16 26 H 0.06 3.06 6.12 -2.39 -0.01 3.04 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.34 12.31 8.25 -89.70 -0.74 11.57 16 29 H 0.05 2.07 7.40 -2.39 -0.02 2.05 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -66.31 296.11 0.23 -66.09 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.35 Total: 11.59 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.42 Total: -9.97 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -6.53 Total: -105.98 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.04 Total: -6.16 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -66.31 0.23 -66.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334280111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.644 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds