Wall clock time and date at job start Sun Mar 29 2020 22:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47016 * 2 1 4 4 C 1.50695 * 109.47526 * 240.00020 * 2 1 3 5 5 H 1.08001 * 120.00238 * 240.00628 * 4 2 1 6 6 C 1.37880 * 120.00021 * 59.99721 * 4 2 1 7 7 N 1.31514 * 119.99670 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47549 * 59.99813 * 8 6 4 10 10 H 1.48505 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47117 * 299.99901 * 8 6 4 12 12 C 1.50700 * 109.47172 * 119.99609 * 2 1 3 13 13 O 1.21280 * 119.99725 * 120.00150 * 12 2 1 14 14 N 1.34781 * 120.00315 * 300.00353 * 12 2 1 15 15 C 1.47577 * 134.49115 * 179.97438 * 14 12 2 16 16 C 1.53949 * 86.11635 * 155.36072 * 15 14 12 17 17 O 1.42900 * 113.73888 * 269.15667 * 16 15 14 18 18 C 1.52996 * 113.74506 * 137.94917 * 16 15 14 19 19 C 1.53002 * 117.49888 * 111.25392 * 18 16 15 20 20 C 1.53000 * 117.50107 * 179.91154 * 18 16 15 21 21 C 1.47579 * 134.49024 * 359.97438 * 14 12 2 22 22 H 1.09000 * 109.46705 * 60.00013 * 1 2 3 23 23 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47061 * 300.00150 * 1 2 3 25 25 H 0.97004 * 120.00110 * 179.97438 * 7 6 4 26 26 H 1.08993 * 113.77245 * 41.06101 * 15 14 12 27 27 H 1.09005 * 113.76539 * 269.65514 * 15 14 12 28 28 H 0.96701 * 114.00283 * 48.40356 * 17 16 15 29 29 H 1.09002 * 115.54951 * 325.58366 * 18 16 15 30 30 H 1.09000 * 117.49996 * 215.00804 * 19 18 16 31 31 H 1.08999 * 117.49664 * 0.02562 * 19 18 16 32 32 H 1.09008 * 117.49673 * 359.97438 * 20 18 16 33 33 H 1.08999 * 117.49942 * 144.97366 * 20 18 16 34 34 H 1.08996 * 113.77244 * 90.33742 * 21 14 12 35 35 H 1.09000 * 113.77123 * 318.94090 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8271 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4547 15 6 2.0086 -0.6775 3.8345 16 6 1.7569 0.7883 4.2323 17 8 2.9317 1.6013 4.2061 18 6 0.9504 0.9466 5.5228 19 6 1.6771 1.5115 6.7451 20 6 0.6521 2.3696 5.9993 21 6 0.9051 0.8844 2.9535 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7095 1.1618 -3.4844 26 1 3.0393 -1.0010 3.9787 27 1 1.2804 -1.3759 4.2472 28 1 3.4532 1.5131 3.3966 29 1 0.1880 0.1873 5.6969 30 1 1.3928 1.1237 7.7233 31 1 2.7295 1.7706 6.6296 32 1 1.0308 3.1930 5.3936 33 1 -0.3067 2.5465 6.4866 34 1 -0.1470 0.6449 3.1073 35 1 1.0550 1.8079 2.3942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334389272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:26 Heat of formation + Delta-G solvation = -24.865418 kcal Electronic energy + Delta-G solvation = -17445.943633 eV Core-core repulsion = 14639.236946 eV Total energy + Delta-G solvation = -2806.706687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47683 -37.94608 -36.11575 -34.63164 -33.75390 -30.70870 -28.36520 -26.13452 -25.12139 -23.74291 -22.33897 -21.66568 -20.05528 -18.43551 -16.72778 -16.36686 -15.97412 -15.62816 -15.17240 -15.11237 -14.28952 -13.95749 -13.47207 -13.09234 -12.77788 -12.51160 -12.17289 -11.64969 -11.60426 -11.49955 -11.27866 -10.99806 -10.77104 -10.74478 -10.62921 -10.31646 -10.26746 -9.97748 -9.54692 -8.99905 -8.63549 -8.36770 -8.20065 -6.04766 -4.08420 3.29657 3.35502 3.37788 3.45019 3.58794 3.64864 4.03958 4.43720 4.49724 4.59919 4.78597 5.04108 5.11401 5.27870 5.37478 5.49723 5.60500 5.60889 5.71893 5.74430 5.85834 6.05605 6.12947 6.17058 6.46449 6.65153 6.83676 6.93559 7.45937 7.56916 7.73664 7.99645 8.15987 8.40511 8.99647 9.15850 9.57060 11.02744 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050234 B = 0.005566 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.260140 B = 5029.547106 C = 5253.238247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.037 3.963 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.542 3.458 13 O -0.542 6.542 14 N -0.657 5.657 15 C 0.075 3.925 16 C 0.132 3.868 17 O -0.538 6.538 18 C -0.139 4.139 19 C -0.167 4.167 20 C -0.169 4.169 21 C 0.085 3.915 22 H 0.093 0.907 23 H 0.029 0.971 24 H 0.014 0.986 25 H 0.262 0.738 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.387 0.613 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 3.642 15.537 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.016 3.984 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.336 3.664 13 O -0.417 6.417 14 N -0.396 5.396 15 C -0.048 4.048 16 C 0.089 3.911 17 O -0.344 6.344 18 C -0.158 4.158 19 C -0.204 4.204 20 C -0.206 4.206 21 C -0.039 4.039 22 H 0.112 0.888 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.237 0.763 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.077 3.301 15.657 16.135 hybrid contribution 0.328 -0.692 -1.444 1.634 sum -1.748 2.609 14.213 14.556 Atomic orbital electron populations 1.21760 0.96495 0.99733 1.01042 1.18811 0.94193 0.96679 0.88680 0.93164 1.21109 1.31196 1.12901 0.89007 0.90900 1.24946 0.95055 0.95056 0.99101 1.69864 1.36989 1.23017 1.23689 0.86489 0.79299 0.79712 0.81541 1.20182 1.21315 1.20157 1.21909 0.78141 0.83692 0.82696 1.90548 1.38570 1.26907 1.85662 1.50386 1.53258 1.31437 1.04550 1.23780 1.02170 0.96585 0.82284 1.22089 0.86088 0.89995 0.92886 1.86340 1.36827 1.66114 1.45124 1.22052 1.01952 0.98435 0.93360 1.22883 0.98953 1.03653 0.94894 1.22911 1.00174 0.93804 1.03678 1.23803 0.96713 0.91123 0.92251 0.88828 0.95191 0.96687 0.92866 0.90144 0.89863 0.76348 0.86256 0.89135 0.87927 0.88302 0.88883 0.89364 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.85 37.16 0.33 -2.77 16 2 C 0.04 0.95 2.47 -92.93 -0.23 0.72 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.48 8.37 -34.44 -0.29 -14.77 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.54 12.79 7.38 -10.98 -0.08 12.71 16 13 O -0.54 -14.68 16.19 5.56 0.09 -14.59 16 14 N -0.66 -11.85 3.45 -178.26 -0.62 -12.46 16 15 C 0.08 1.09 8.19 -2.98 -0.02 1.06 16 16 C 0.13 1.64 1.69 -89.69 -0.15 1.48 16 17 O -0.54 -6.94 12.26 -35.23 -0.43 -7.37 16 18 C -0.14 -1.41 5.43 -90.62 -0.49 -1.90 16 19 C -0.17 -1.59 9.96 -26.69 -0.27 -1.85 16 20 C -0.17 -1.58 10.10 -26.70 -0.27 -1.85 16 21 C 0.08 1.20 6.24 -2.97 -0.02 1.18 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.01 0.28 6.13 -51.93 -0.32 -0.03 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 28 H 0.39 4.75 8.90 45.56 0.41 5.15 16 29 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.10 7.45 -51.93 -0.39 0.71 16 32 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.13 7.92 -51.93 -0.41 0.72 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -31.87 292.83 -6.84 -38.72 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.32 Total: 3.41 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.59 Total: -4.43 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.01 Total: -37.07 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.34 Total: -21.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.87 -6.84 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334389272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.851 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds