Wall clock time and date at job start Sun Mar 29 2020 22:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47016 * 2 1 4 4 C 1.50695 * 109.47526 * 240.00020 * 2 1 3 5 5 H 1.08001 * 120.00238 * 240.00628 * 4 2 1 6 6 C 1.37880 * 120.00021 * 59.99721 * 4 2 1 7 7 N 1.31514 * 119.99670 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47549 * 59.99813 * 8 6 4 10 10 H 1.48505 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47117 * 299.99901 * 8 6 4 12 12 C 1.50700 * 109.47172 * 119.99609 * 2 1 3 13 13 O 1.21280 * 119.99725 * 120.00150 * 12 2 1 14 14 N 1.34781 * 120.00315 * 300.00353 * 12 2 1 15 15 C 1.47577 * 134.49115 * 179.97438 * 14 12 2 16 16 C 1.53949 * 86.11635 * 155.36072 * 15 14 12 17 17 O 1.42900 * 113.73888 * 269.15667 * 16 15 14 18 18 C 1.52996 * 113.74506 * 137.94917 * 16 15 14 19 19 C 1.53002 * 117.49888 * 111.25392 * 18 16 15 20 20 C 1.53000 * 117.50107 * 179.91154 * 18 16 15 21 21 C 1.47579 * 134.49024 * 359.97438 * 14 12 2 22 22 H 1.09000 * 109.46705 * 60.00013 * 1 2 3 23 23 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47061 * 300.00150 * 1 2 3 25 25 H 0.97004 * 120.00110 * 179.97438 * 7 6 4 26 26 H 1.08993 * 113.77245 * 41.06101 * 15 14 12 27 27 H 1.09005 * 113.76539 * 269.65514 * 15 14 12 28 28 H 0.96701 * 114.00283 * 48.40356 * 17 16 15 29 29 H 1.09002 * 115.54951 * 325.58366 * 18 16 15 30 30 H 1.09000 * 117.49996 * 215.00804 * 19 18 16 31 31 H 1.08999 * 117.49664 * 0.02562 * 19 18 16 32 32 H 1.09008 * 117.49673 * 359.97438 * 20 18 16 33 33 H 1.08999 * 117.49942 * 144.97366 * 20 18 16 34 34 H 1.08996 * 113.77244 * 90.33742 * 21 14 12 35 35 H 1.09000 * 113.77123 * 318.94090 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8271 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4547 15 6 2.0086 -0.6775 3.8345 16 6 1.7569 0.7883 4.2323 17 8 2.9317 1.6013 4.2061 18 6 0.9504 0.9466 5.5228 19 6 1.6771 1.5115 6.7451 20 6 0.6521 2.3696 5.9993 21 6 0.9051 0.8844 2.9535 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7095 1.1618 -3.4844 26 1 3.0393 -1.0010 3.9787 27 1 1.2804 -1.3759 4.2472 28 1 3.4532 1.5131 3.3966 29 1 0.1880 0.1873 5.6969 30 1 1.3928 1.1237 7.7233 31 1 2.7295 1.7706 6.6296 32 1 1.0308 3.1930 5.3936 33 1 -0.3067 2.5465 6.4866 34 1 -0.1470 0.6449 3.1073 35 1 1.0550 1.8079 2.3942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334389272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:25 Heat of formation + Delta-G solvation = -47.559940 kcal Electronic energy + Delta-G solvation = -17446.927742 eV Core-core repulsion = 14639.236946 eV Total energy + Delta-G solvation = -2807.690795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74950 -39.54709 -37.11504 -35.84720 -35.75800 -32.71358 -29.80980 -27.48372 -27.06610 -25.12241 -23.28947 -23.05109 -21.01218 -19.98471 -18.41502 -18.00081 -17.43476 -17.07374 -16.68477 -16.18416 -15.89951 -15.48216 -14.81075 -14.63348 -14.24809 -14.01241 -13.63215 -13.21169 -13.01075 -12.85702 -12.74929 -12.56577 -12.32176 -12.25769 -12.20938 -12.02387 -11.60121 -11.16933 -11.07368 -10.61876 -10.54522 -10.29477 -9.70662 -8.18498 -6.29841 1.39310 1.40932 1.49447 1.76673 1.96583 2.42368 2.75015 3.05120 3.10686 3.47465 3.62616 3.80244 4.07411 4.24012 4.30670 4.43053 4.46270 4.58127 4.62312 4.69604 4.83793 4.92259 4.93008 4.96654 5.09339 5.16909 5.34742 5.43875 5.45118 5.68420 5.91045 6.17785 6.51070 6.69224 6.80820 7.34369 7.41863 8.87165 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050234 B = 0.005566 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.260140 B = 5029.547106 C = 5253.238247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.033 3.967 3 H 0.037 0.963 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.541 3.459 13 O -0.591 6.591 14 N -0.657 5.657 15 C 0.072 3.928 16 C 0.149 3.851 17 O -0.543 6.543 18 C -0.144 4.144 19 C -0.165 4.165 20 C -0.163 4.163 21 C 0.080 3.920 22 H 0.071 0.929 23 H 0.019 0.981 24 H 0.051 0.949 25 H 0.266 0.734 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.388 0.612 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 4.129 17.003 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.012 3.988 3 H 0.055 0.945 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.333 3.667 13 O -0.471 6.471 14 N -0.394 5.394 15 C -0.051 4.051 16 C 0.106 3.894 17 O -0.349 6.349 18 C -0.163 4.163 19 C -0.202 4.202 20 C -0.200 4.200 21 C -0.043 4.043 22 H 0.090 0.910 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.237 0.763 29 H 0.159 0.841 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.277 3.837 17.174 17.900 hybrid contribution 0.696 -0.773 -1.810 2.088 sum -2.581 3.064 15.363 15.877 Atomic orbital electron populations 1.21556 0.95012 0.99198 1.01747 1.18709 0.95349 0.95602 0.89094 0.94543 1.21249 1.31963 1.12871 0.91188 0.93541 1.25603 0.95068 0.95722 1.01413 1.69938 1.36971 1.23437 1.24502 0.85629 0.78682 0.78723 0.78716 1.20159 1.19663 1.20162 1.21402 0.78055 0.83075 0.84135 1.90510 1.40859 1.28915 1.86783 1.50271 1.52669 1.32121 1.04331 1.24120 1.02567 0.98706 0.79679 1.21981 0.85606 0.88233 0.93534 1.86360 1.37111 1.66177 1.45253 1.22116 1.02300 0.99802 0.92068 1.22923 0.98207 1.03521 0.95583 1.22973 1.01049 0.92784 1.03224 1.24162 0.97933 0.89563 0.92600 0.90977 0.96170 0.92980 0.92458 0.90942 0.87418 0.76266 0.84051 0.87098 0.89513 0.89515 0.86749 0.86881 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.85 71.98 0.64 -4.82 16 2 C 0.03 1.73 2.47 -12.29 -0.03 1.70 16 3 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.53 -31.64 8.37 25.60 0.21 -31.42 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -51.37 11.32 21.45 0.24 -51.13 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.54 25.92 7.38 87.66 0.65 26.57 16 13 O -0.59 -33.10 16.19 -3.03 -0.05 -33.15 16 14 N -0.66 -23.14 3.45 -840.10 -2.90 -26.04 16 15 C 0.07 1.94 8.19 86.48 0.71 2.65 16 16 C 0.15 3.36 1.69 -10.13 -0.02 3.34 16 17 O -0.54 -13.32 12.26 -148.98 -1.83 -15.15 16 18 C -0.14 -2.41 5.43 -10.79 -0.06 -2.47 16 19 C -0.17 -2.64 9.96 30.62 0.30 -2.33 16 20 C -0.16 -2.51 10.10 30.62 0.31 -2.20 16 21 C 0.08 2.08 6.24 86.48 0.54 2.61 16 22 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 23 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 1.97 6.13 -2.39 -0.01 1.95 16 25 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.11 2.45 8.10 -2.38 -0.02 2.43 16 28 H 0.39 9.38 8.90 -74.06 -0.66 8.72 16 29 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.68 7.45 -2.39 -0.02 1.67 16 32 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 2.47 7.92 -2.39 -0.02 2.45 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.06 292.83 1.63 -68.43 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.43 Total: 14.41 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 3.70 Total: -4.72 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.66 Total: -77.16 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -1.88 Total: -48.30 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.06 1.63 -68.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334389272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.873 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds