Wall clock time and date at job start Sun Mar 29 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99829 * 2 1 4 4 C 1.50699 * 109.47212 * 66.04128 * 3 2 1 5 5 N 1.30497 * 125.65035 * 269.69156 * 4 3 2 6 6 C 1.34135 * 109.25476 * 179.89582 * 5 4 3 7 7 C 1.34665 * 108.01827 * 0.36739 * 6 5 4 8 8 N 1.35045 * 125.65023 * 89.99748 * 4 3 2 9 9 C 1.46502 * 126.39779 * 359.97438 * 8 4 3 10 10 C 1.46891 * 111.00353 * 236.04324 * 2 1 3 11 11 C 1.53007 * 109.47311 * 293.95609 * 10 2 1 12 12 H 1.08995 * 109.46729 * 60.00100 * 11 10 2 13 13 O 1.42901 * 109.46576 * 299.99933 * 11 10 2 14 14 C 1.50697 * 109.46894 * 180.02562 * 11 10 2 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 H 1.08998 * 109.46796 * 183.95056 * 1 2 3 23 23 H 1.08997 * 109.47613 * 303.96180 * 1 2 3 24 24 H 1.09007 * 109.46887 * 63.95835 * 1 2 3 25 25 H 1.09003 * 109.47015 * 186.04298 * 3 2 1 26 26 H 1.09000 * 109.47198 * 306.04446 * 3 2 1 27 27 H 1.08000 * 125.98930 * 180.12253 * 6 5 4 28 28 H 1.08007 * 126.58437 * 179.74782 * 7 6 5 29 29 H 1.09000 * 109.47602 * 89.99500 * 9 8 4 30 30 H 1.08993 * 109.47077 * 209.99705 * 9 8 4 31 31 H 1.09000 * 109.46792 * 329.99440 * 9 8 4 32 32 H 1.09000 * 109.47319 * 173.95542 * 10 2 1 33 33 H 1.08999 * 109.47480 * 53.95319 * 10 2 1 34 34 H 0.96703 * 114.00389 * 299.99541 * 13 11 10 35 35 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 7 0.5538 2.7402 1.5213 6 6 0.5685 3.1896 2.7851 7 6 1.7076 2.7655 3.3647 8 7 2.3857 2.0407 2.4221 9 6 3.6819 1.3814 2.5992 10 6 1.9955 -0.7660 -1.1374 11 6 1.6315 -2.2427 -0.9702 12 1 0.5473 -2.3475 -0.9323 13 8 2.2009 -2.7391 0.2428 14 6 2.1722 -3.0285 -2.1369 15 1 2.7210 -2.5252 -2.9192 16 6 1.9673 -4.3903 -2.2050 17 7 2.4387 -5.0761 -3.2234 18 14 1.0187 -5.2609 -0.8516 19 1 1.9616 -5.7063 0.2058 20 1 0.0231 -4.3278 -0.2658 21 1 0.3177 -6.4408 -1.4187 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5741 0.8523 24 1 -0.3633 0.4512 -0.9234 25 1 3.0797 1.3444 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 -0.1969 3.7900 3.2541 28 1 2.0253 2.9604 4.3785 29 1 4.4808 2.0722 2.3298 30 1 3.7973 1.0807 3.6405 31 1 3.7319 0.5006 1.9591 32 1 3.0798 -0.6611 -1.1754 33 1 1.5612 -0.3874 -2.0627 34 1 3.1653 -2.6771 0.2789 35 1 2.2941 -6.0340 -3.2714 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334644239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:04 Heat of formation + Delta-G solvation = 24.279278 kcal Electronic energy + Delta-G solvation = -17376.165716 eV Core-core repulsion = 14603.882854 eV Total energy + Delta-G solvation = -2772.282862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99985 -37.61612 -35.20684 -33.93926 -32.26078 -30.62299 -28.57215 -27.27201 -26.67693 -25.48236 -22.49509 -21.29826 -20.10133 -19.55997 -17.37832 -16.96507 -15.90277 -15.15685 -14.89246 -14.76820 -14.66037 -13.99235 -13.74788 -13.43926 -13.27406 -12.81756 -12.72447 -12.64777 -12.30826 -11.73346 -11.50660 -11.16692 -10.91609 -10.84982 -10.59314 -9.89414 -9.77852 -9.52411 -9.17931 -8.66903 -8.49551 -8.35393 -7.84482 -6.15161 -4.27227 2.07551 2.85597 3.18019 3.45107 3.48365 3.62370 4.34054 4.49467 4.67790 4.75568 4.82669 5.07296 5.16813 5.23899 5.39708 5.49217 5.60188 5.71197 5.82242 5.87145 5.96659 6.11435 6.26869 6.34919 6.49073 6.55984 6.81539 7.18084 7.22556 7.36647 7.49585 7.66259 8.19545 8.26183 8.80700 9.05989 9.48795 10.95171 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041749 B = 0.005704 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.520633 B = 4907.324397 C = 4949.326765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.531 5.531 3 C 0.134 3.866 4 C 0.228 3.772 5 N -0.493 5.493 6 C -0.032 4.032 7 C -0.065 4.065 8 N -0.449 5.449 9 C 0.071 3.929 10 C 0.040 3.960 11 C 0.199 3.801 12 H 0.060 0.940 13 O -0.575 6.575 14 C -0.564 4.564 15 H 0.073 0.927 16 C 0.083 3.917 17 N -0.893 5.893 18 Si 0.916 3.084 19 H -0.279 1.279 20 H -0.268 1.268 21 H -0.306 1.306 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.023 0.977 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.357 0.643 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 13.912 11.595 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.256 5.256 3 C 0.004 3.996 4 C -0.036 4.036 5 N -0.212 5.212 6 C -0.180 4.180 7 C -0.199 4.199 8 N -0.131 5.131 9 C -0.072 4.072 10 C -0.087 4.087 11 C 0.142 3.858 12 H 0.077 0.923 13 O -0.380 6.380 14 C -0.602 4.602 15 H 0.091 0.909 16 C -0.122 4.122 17 N -0.530 5.530 18 Si 0.746 3.254 19 H -0.205 1.205 20 H -0.193 1.193 21 H -0.235 1.235 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.183 0.817 28 H 0.188 0.812 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.203 0.797 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.819 13.484 11.524 17.756 hybrid contribution 0.538 -0.113 0.403 0.682 sum 1.357 13.371 11.927 17.969 Atomic orbital electron populations 1.22393 0.87090 1.02272 1.00372 1.62032 1.08610 1.09938 1.44997 1.20386 1.00143 0.89647 0.89439 1.23134 0.89283 1.00813 0.90324 1.70254 1.19792 1.14188 1.17013 1.22237 0.98400 1.05623 0.91758 1.22635 0.96760 1.04096 0.96397 1.45228 1.17839 1.39061 1.10954 1.22083 0.81970 0.98777 1.04383 1.22881 0.99438 0.96715 0.89663 1.19881 0.94994 0.87366 0.83592 0.92263 1.86385 1.24042 1.85654 1.41966 1.21534 1.37888 0.93354 1.07408 0.90895 1.25003 0.94231 0.97544 0.95404 1.69959 1.44985 1.07959 1.30133 0.86215 0.80358 0.77697 0.81180 1.20455 1.19302 1.23459 0.91076 0.91361 0.95835 0.89713 0.92055 0.81664 0.81225 0.90903 0.89830 0.88299 0.91249 0.94479 0.79682 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.15 60.06 0.55 1.03 16 2 N -0.53 -9.15 4.62 -244.37 -1.13 -10.28 16 3 C 0.13 1.96 5.05 -4.98 -0.03 1.93 16 4 C 0.23 3.41 6.53 -155.42 -1.02 2.40 16 5 N -0.49 -7.94 10.41 -10.82 -0.11 -8.05 16 6 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 7 C -0.07 -0.76 11.58 -16.57 -0.19 -0.95 16 8 N -0.45 -5.66 3.15 -121.28 -0.38 -6.04 16 9 C 0.07 0.64 10.79 59.85 0.65 1.29 16 10 C 0.04 0.77 4.56 -3.83 -0.02 0.75 16 11 C 0.20 4.61 2.17 -27.88 -0.06 4.55 16 12 H 0.06 1.46 5.61 -51.93 -0.29 1.17 16 13 O -0.58 -12.98 10.90 -35.23 -0.38 -13.37 16 14 C -0.56 -15.39 9.34 -34.44 -0.32 -15.71 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.89 -26.96 13.96 55.43 0.77 -26.18 16 18 Si 0.92 23.32 26.18 -169.99 -4.45 18.87 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.83 6.54 56.52 0.37 -6.46 16 21 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 22 H 0.07 1.35 6.47 -51.93 -0.34 1.02 16 23 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 1.07 7.49 -51.93 -0.39 0.68 16 26 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 27 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.00 7.66 -51.93 -0.40 0.60 16 32 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.36 7.04 9.04 45.56 0.41 7.45 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -33.10 290.31 -6.35 -39.45 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.30 Total: 4.32 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.75 Total: -3.09 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.85 Total: -50.55 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.38 Total: -13.37 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.45 Total: 18.87 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.10 -6.35 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334644239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.726 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds