Wall clock time and date at job start Sun Mar 29 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99829 * 2 1 4 4 C 1.50699 * 109.47212 * 66.04128 * 3 2 1 5 5 N 1.30497 * 125.65035 * 269.69156 * 4 3 2 6 6 C 1.34135 * 109.25476 * 179.89582 * 5 4 3 7 7 C 1.34665 * 108.01827 * 0.36739 * 6 5 4 8 8 N 1.35045 * 125.65023 * 89.99748 * 4 3 2 9 9 C 1.46502 * 126.39779 * 359.97438 * 8 4 3 10 10 C 1.46891 * 111.00353 * 236.04324 * 2 1 3 11 11 C 1.53007 * 109.47311 * 293.95609 * 10 2 1 12 12 H 1.08995 * 109.46729 * 60.00100 * 11 10 2 13 13 O 1.42901 * 109.46576 * 299.99933 * 11 10 2 14 14 C 1.50697 * 109.46894 * 180.02562 * 11 10 2 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 H 1.08998 * 109.46796 * 183.95056 * 1 2 3 23 23 H 1.08997 * 109.47613 * 303.96180 * 1 2 3 24 24 H 1.09007 * 109.46887 * 63.95835 * 1 2 3 25 25 H 1.09003 * 109.47015 * 186.04298 * 3 2 1 26 26 H 1.09000 * 109.47198 * 306.04446 * 3 2 1 27 27 H 1.08000 * 125.98930 * 180.12253 * 6 5 4 28 28 H 1.08007 * 126.58437 * 179.74782 * 7 6 5 29 29 H 1.09000 * 109.47602 * 89.99500 * 9 8 4 30 30 H 1.08993 * 109.47077 * 209.99705 * 9 8 4 31 31 H 1.09000 * 109.46792 * 329.99440 * 9 8 4 32 32 H 1.09000 * 109.47319 * 173.95542 * 10 2 1 33 33 H 1.08999 * 109.47480 * 53.95319 * 10 2 1 34 34 H 0.96703 * 114.00389 * 299.99541 * 13 11 10 35 35 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 7 0.5538 2.7402 1.5213 6 6 0.5685 3.1896 2.7851 7 6 1.7076 2.7655 3.3647 8 7 2.3857 2.0407 2.4221 9 6 3.6819 1.3814 2.5992 10 6 1.9955 -0.7660 -1.1374 11 6 1.6315 -2.2427 -0.9702 12 1 0.5473 -2.3475 -0.9323 13 8 2.2009 -2.7391 0.2428 14 6 2.1722 -3.0285 -2.1369 15 1 2.7210 -2.5252 -2.9192 16 6 1.9673 -4.3903 -2.2050 17 7 2.4387 -5.0761 -3.2234 18 14 1.0187 -5.2609 -0.8516 19 1 1.9616 -5.7063 0.2058 20 1 0.0231 -4.3278 -0.2658 21 1 0.3177 -6.4408 -1.4187 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5741 0.8523 24 1 -0.3633 0.4512 -0.9234 25 1 3.0797 1.3444 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 -0.1969 3.7900 3.2541 28 1 2.0253 2.9604 4.3785 29 1 4.4808 2.0722 2.3298 30 1 3.7973 1.0807 3.6405 31 1 3.7319 0.5006 1.9591 32 1 3.0798 -0.6611 -1.1754 33 1 1.5612 -0.3874 -2.0627 34 1 3.1653 -2.6771 0.2789 35 1 2.2941 -6.0340 -3.2714 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334644239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:03 Heat of formation + Delta-G solvation = -1.422927 kcal Electronic energy + Delta-G solvation = -17377.280247 eV Core-core repulsion = 14603.882854 eV Total energy + Delta-G solvation = -2773.397393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.96424 -39.16683 -36.87092 -34.84267 -34.41803 -31.87537 -30.21466 -28.36081 -27.78331 -27.05447 -24.08805 -22.23273 -21.80268 -20.59187 -19.39632 -17.90812 -17.07424 -16.90271 -16.46606 -16.31473 -15.95602 -15.29120 -15.15824 -14.87700 -14.69637 -14.27411 -13.69156 -13.66298 -13.50105 -13.28120 -13.06433 -12.81968 -12.65621 -12.53865 -12.38384 -11.74917 -11.11566 -10.91190 -10.86614 -10.47459 -10.35766 -9.43249 -9.16021 -8.36187 -6.50174 1.11576 1.41420 1.43249 1.58988 1.99944 2.15185 2.38188 2.98904 3.08439 3.57935 3.87284 4.06351 4.10100 4.19576 4.29312 4.41599 4.47006 4.47814 4.61758 4.67162 4.70273 4.79018 4.87294 4.97229 5.02330 5.43346 5.44658 5.46318 5.89877 6.00619 6.06271 6.10250 6.31711 6.63095 7.20669 7.22583 7.37771 8.77832 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041749 B = 0.005704 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.520633 B = 4907.324397 C = 4949.326765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.531 5.531 3 C 0.139 3.861 4 C 0.201 3.799 5 N -0.527 5.527 6 C -0.060 4.060 7 C -0.049 4.049 8 N -0.449 5.449 9 C 0.065 3.935 10 C 0.054 3.946 11 C 0.207 3.793 12 H 0.045 0.955 13 O -0.578 6.578 14 C -0.562 4.562 15 H 0.045 0.955 16 C 0.034 3.966 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.305 1.305 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.025 0.975 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.184 0.816 28 H 0.209 0.791 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.372 0.628 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 14.836 13.783 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C 0.010 3.990 4 C -0.062 4.062 5 N -0.248 5.248 6 C -0.208 4.208 7 C -0.184 4.184 8 N -0.131 5.131 9 C -0.076 4.076 10 C -0.074 4.074 11 C 0.149 3.851 12 H 0.063 0.937 13 O -0.385 6.385 14 C -0.600 4.600 15 H 0.064 0.936 16 C -0.166 4.166 17 N -0.575 5.575 18 Si 0.801 3.199 19 H -0.199 1.199 20 H -0.193 1.193 21 H -0.233 1.233 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.201 0.799 28 H 0.226 0.774 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.220 0.780 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.461 14.417 13.720 19.955 hybrid contribution 0.390 -0.312 -0.239 0.553 sum 1.851 14.105 13.481 19.599 Atomic orbital electron populations 1.22270 0.87608 1.01058 1.00447 1.61939 1.08175 1.11727 1.43762 1.20365 1.01194 0.87753 0.89727 1.23007 0.90065 1.02019 0.91132 1.70169 1.20825 1.15042 1.18746 1.22709 1.00032 1.06759 0.91294 1.23257 0.95652 1.02026 0.97419 1.45475 1.18587 1.38696 1.10337 1.22320 0.80958 0.98732 1.05600 1.22565 1.00301 0.94366 0.90121 1.19625 0.93933 0.89403 0.82151 0.93737 1.86319 1.25428 1.85792 1.40966 1.21855 1.36677 0.93524 1.07946 0.93628 1.25727 0.95202 0.98527 0.97164 1.70060 1.46980 1.08428 1.32071 0.85314 0.79194 0.76625 0.78786 1.19889 1.19316 1.23278 0.92766 0.91466 0.95606 0.87577 0.92478 0.79909 0.77411 0.88728 0.87697 0.89393 0.89767 0.95093 0.78028 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 9.15 127.69 1.17 2.37 16 2 N -0.53 -17.61 4.62 -927.05 -4.28 -21.89 16 3 C 0.14 3.85 5.05 85.56 0.43 4.29 16 4 C 0.20 5.69 6.53 138.13 0.90 6.59 16 5 N -0.53 -16.42 10.41 -188.13 -1.96 -18.38 16 6 C -0.06 -1.49 11.87 83.52 0.99 -0.49 16 7 C -0.05 -0.99 11.58 83.09 0.96 -0.03 16 8 N -0.45 -10.08 3.15 -537.62 -1.69 -11.78 16 9 C 0.07 0.96 10.79 127.77 1.38 2.34 16 10 C 0.05 2.00 4.56 86.31 0.39 2.39 16 11 C 0.21 9.40 2.17 29.85 0.06 9.46 16 12 H 0.04 2.18 5.61 -2.39 -0.01 2.17 16 13 O -0.58 -25.02 10.90 -148.98 -1.62 -26.64 16 14 C -0.56 -30.73 9.34 25.60 0.24 -30.49 16 15 H 0.05 2.70 7.99 -2.91 -0.02 2.67 16 16 C 0.03 1.95 5.47 84.65 0.46 2.41 16 17 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 18 Si 0.97 47.84 26.18 68.60 1.80 49.63 16 19 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.27 -13.11 6.54 99.48 0.65 -12.46 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 22 H 0.05 2.05 6.47 -2.39 -0.02 2.03 16 23 H 0.07 2.36 6.53 -2.39 -0.02 2.34 16 24 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.11 2.43 7.49 -2.39 -0.02 2.41 16 26 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 27 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.53 7.66 -2.39 -0.02 1.51 16 32 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 33 H 0.03 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.37 13.82 9.04 -74.06 -0.67 13.15 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -70.60 290.31 -0.11 -70.71 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.36 Total: 16.29 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 7.00 Total: -1.15 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -7.64 Total: -108.84 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.62 Total: -26.64 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.80 Total: 49.63 kcal Total: -70.60 -0.11 -70.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334644239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.292 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds