Wall clock time and date at job start Sun Mar 29 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30009 * 126.21041 * 2 1 4 4 O 1.21275 * 110.49327 * 179.97438 * 3 2 1 5 5 C 1.34055 * 109.75116 * 359.97438 * 4 3 2 6 6 N 1.37365 * 126.66771 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00183 * 0.02885 * 6 5 4 8 8 C 1.52998 * 109.47237 * 179.72163 * 7 6 5 9 9 C 1.52993 * 109.47254 * 300.00146 * 8 7 6 10 10 C 1.53008 * 109.47007 * 59.99821 * 8 7 6 11 11 C 1.52996 * 109.46929 * 179.97438 * 8 7 6 12 12 C 1.50709 * 109.47079 * 180.02562 * 11 8 7 13 13 H 1.08001 * 119.99331 * 0.02562 * 12 11 8 14 14 C 1.37869 * 120.00242 * 179.97438 * 12 11 8 15 15 N 1.31520 * 120.00070 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00390 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46949 * 59.99946 * 16 14 12 18 18 H 1.48496 * 109.47648 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47026 * 300.00228 * 16 14 12 20 20 N 1.32152 * 106.65940 * 0.24298 * 5 4 3 21 21 H 1.08996 * 109.47089 * 89.97831 * 1 2 3 22 22 H 1.09001 * 109.46796 * 209.97871 * 1 2 3 23 23 H 1.08998 * 109.46748 * 329.97521 * 1 2 3 24 24 H 0.97005 * 119.99947 * 179.74952 * 6 5 4 25 25 H 1.09001 * 109.46512 * 299.72532 * 7 6 5 26 26 H 1.08998 * 109.47174 * 59.71654 * 7 6 5 27 27 H 1.09002 * 109.47712 * 59.99463 * 9 8 7 28 28 H 1.08995 * 109.47426 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47145 * 299.99770 * 9 8 7 30 30 H 1.09004 * 109.46786 * 59.99901 * 10 8 7 31 31 H 1.08995 * 109.46766 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.47164 * 300.00057 * 10 8 7 33 33 H 1.09000 * 109.47441 * 299.99910 * 11 8 7 34 34 H 1.08994 * 109.47235 * 60.00181 * 11 8 7 35 35 H 0.96994 * 120.00439 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0490 0.0000 4 8 3.4424 0.7205 0.0005 5 6 3.5367 -0.6168 0.0015 6 7 4.6935 -1.3575 0.0018 7 6 5.9947 -0.6841 0.0016 8 6 7.1106 -1.7307 0.0090 9 6 6.9864 -2.5999 1.2619 10 6 6.9921 -2.6115 -1.2365 11 6 8.4694 -1.0274 0.0083 12 6 9.5687 -2.0583 0.0149 13 1 9.3226 -3.1099 0.0188 14 6 10.8883 -1.6590 0.0149 15 7 11.1878 -0.3784 0.0096 16 14 12.2508 -2.9368 0.0239 17 1 12.1349 -3.7924 -1.1843 18 1 13.5696 -2.2542 0.0230 19 1 12.1310 -3.7796 1.2407 20 7 2.3005 -1.0838 -0.0039 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.6490 -2.3265 0.0061 25 1 6.0831 -0.0649 -0.8910 26 1 6.0791 -0.0566 0.8889 27 1 6.0183 -3.1010 1.2621 28 1 7.7817 -3.3452 1.2675 29 1 7.0709 -1.9725 2.1493 30 1 7.0806 -1.9922 -2.1291 31 1 7.7868 -3.3574 -1.2309 32 1 6.0240 -3.1125 -1.2364 33 1 8.5577 -0.4085 -0.8846 34 1 8.5541 -0.3997 0.8953 35 1 12.1162 -0.0974 0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336635114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:59 Heat of formation + Delta-G solvation = 53.878515 kcal Electronic energy + Delta-G solvation = -16985.792352 eV Core-core repulsion = 14214.793009 eV Total energy + Delta-G solvation = -2770.999343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.07675 -38.21170 -35.78337 -34.92338 -32.48620 -31.07774 -28.92376 -27.16725 -26.61280 -26.24910 -23.56724 -23.07804 -21.11846 -18.57022 -17.88883 -17.80375 -16.65565 -16.27873 -14.86777 -14.54509 -14.47566 -13.73284 -13.59088 -13.33328 -12.91320 -12.83649 -12.80349 -12.13756 -11.93485 -11.65450 -11.20841 -11.07260 -10.92913 -10.72251 -10.70264 -10.56398 -10.42416 -10.34732 -9.93408 -9.33823 -9.04653 -8.41990 -8.21303 -6.06358 -4.08129 1.61199 2.35630 2.56080 3.28705 3.34449 3.35592 3.57680 4.15675 4.40309 4.69383 5.20661 5.28802 5.31118 5.40880 5.43148 5.49877 5.61877 5.93984 6.01260 6.02650 6.10261 6.17771 6.23658 6.52129 6.53570 6.82984 6.94107 6.97170 7.02041 7.30489 7.53728 7.64734 7.91253 8.32194 8.57601 8.96014 9.55622 11.05011 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.065463 B = 0.004442 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.622144 B = 6301.602691 C = 6527.557453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.195 3.805 3 N -0.409 5.409 4 O 0.032 5.968 5 C 0.439 3.561 6 N -0.656 5.656 7 C 0.125 3.875 8 C -0.069 4.069 9 C -0.130 4.130 10 C -0.130 4.130 11 C 0.037 3.963 12 C -0.514 4.514 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.555 5.555 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.429 0.571 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 -1.717 0.003 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 N -0.135 5.135 4 O -0.012 6.012 5 C 0.129 3.871 6 N -0.307 5.307 7 C 0.002 3.998 8 C -0.070 4.070 9 C -0.187 4.187 10 C -0.187 4.187 11 C -0.001 4.001 12 C -0.552 4.552 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 N -0.304 5.304 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.272 0.728 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.349 -0.924 -0.005 15.376 hybrid contribution 1.141 -1.038 0.000 1.543 sum -14.207 -1.962 -0.005 14.342 Atomic orbital electron populations 1.20056 0.83607 1.04172 1.03863 1.25398 0.99837 0.83878 0.98840 1.74535 0.88532 1.22759 1.27634 1.85350 1.22745 1.22199 1.70886 1.24372 0.89124 0.81910 0.91682 1.43825 1.00289 1.08451 1.78141 1.22009 0.79327 0.96195 1.02271 1.20910 0.95917 0.94650 0.95527 1.21792 0.99832 1.00054 0.97065 1.21796 0.99837 0.99988 0.97114 1.19101 0.87817 0.95509 0.97651 1.21117 0.90499 0.92885 1.50729 0.92218 1.24998 0.98873 0.95105 0.95398 1.69942 1.18600 1.14232 1.50569 0.86696 0.81342 0.81610 0.78580 1.20280 1.21371 1.20283 1.72269 0.97375 1.27676 1.33044 0.89688 0.89407 0.89854 0.72844 0.91128 0.91137 0.95060 0.91088 0.93139 0.93131 0.91094 0.95066 0.96163 0.96163 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.19 2.77 8.20 -156.48 -1.28 1.48 16 3 N -0.41 -6.53 12.14 31.16 0.38 -6.15 16 4 O 0.03 0.52 11.07 17.04 0.19 0.71 16 5 C 0.44 6.74 9.10 -87.54 -0.80 5.95 16 6 N -0.66 -9.18 5.07 -62.50 -0.32 -9.49 16 7 C 0.12 1.92 4.96 -4.04 -0.02 1.90 16 8 C -0.07 -1.21 0.54 -154.51 -0.08 -1.29 16 9 C -0.13 -2.14 8.05 37.15 0.30 -1.84 16 10 C -0.13 -2.13 8.05 37.16 0.30 -1.84 16 11 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 12 C -0.51 -13.07 7.65 -34.44 -0.26 -13.33 16 13 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 16 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 N -0.56 -8.54 11.59 -13.04 -0.15 -8.69 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.43 5.50 6.28 -40.82 -0.26 5.24 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -28.94 291.08 -6.37 -35.32 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.89 Total: 0.08 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.68 Total: -6.95 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.65 Total: -49.17 kcal Atomic # 8 Polarization: 0.52 SS G_CDS: 0.19 Total: 0.71 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.94 -6.37 -35.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336635114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.196 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds