Wall clock time and date at job start Sun Mar 29 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30009 * 126.21041 * 2 1 4 4 O 1.21275 * 110.49327 * 179.97438 * 3 2 1 5 5 C 1.34055 * 109.75116 * 359.97438 * 4 3 2 6 6 N 1.37365 * 126.66771 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00183 * 0.02885 * 6 5 4 8 8 C 1.52998 * 109.47237 * 179.72163 * 7 6 5 9 9 C 1.52993 * 109.47254 * 300.00146 * 8 7 6 10 10 C 1.53008 * 109.47007 * 59.99821 * 8 7 6 11 11 C 1.52996 * 109.46929 * 179.97438 * 8 7 6 12 12 C 1.50709 * 109.47079 * 180.02562 * 11 8 7 13 13 H 1.08001 * 119.99331 * 0.02562 * 12 11 8 14 14 C 1.37869 * 120.00242 * 179.97438 * 12 11 8 15 15 N 1.31520 * 120.00070 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00390 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46949 * 59.99946 * 16 14 12 18 18 H 1.48496 * 109.47648 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47026 * 300.00228 * 16 14 12 20 20 N 1.32152 * 106.65940 * 0.24298 * 5 4 3 21 21 H 1.08996 * 109.47089 * 89.97831 * 1 2 3 22 22 H 1.09001 * 109.46796 * 209.97871 * 1 2 3 23 23 H 1.08998 * 109.46748 * 329.97521 * 1 2 3 24 24 H 0.97005 * 119.99947 * 179.74952 * 6 5 4 25 25 H 1.09001 * 109.46512 * 299.72532 * 7 6 5 26 26 H 1.08998 * 109.47174 * 59.71654 * 7 6 5 27 27 H 1.09002 * 109.47712 * 59.99463 * 9 8 7 28 28 H 1.08995 * 109.47426 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47145 * 299.99770 * 9 8 7 30 30 H 1.09004 * 109.46786 * 59.99901 * 10 8 7 31 31 H 1.08995 * 109.46766 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.47164 * 300.00057 * 10 8 7 33 33 H 1.09000 * 109.47441 * 299.99910 * 11 8 7 34 34 H 1.08994 * 109.47235 * 60.00181 * 11 8 7 35 35 H 0.96994 * 120.00439 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0490 0.0000 4 8 3.4424 0.7205 0.0005 5 6 3.5367 -0.6168 0.0015 6 7 4.6935 -1.3575 0.0018 7 6 5.9947 -0.6841 0.0016 8 6 7.1106 -1.7307 0.0090 9 6 6.9864 -2.5999 1.2619 10 6 6.9921 -2.6115 -1.2365 11 6 8.4694 -1.0274 0.0083 12 6 9.5687 -2.0583 0.0149 13 1 9.3226 -3.1099 0.0188 14 6 10.8883 -1.6590 0.0149 15 7 11.1878 -0.3784 0.0096 16 14 12.2508 -2.9368 0.0239 17 1 12.1349 -3.7924 -1.1843 18 1 13.5696 -2.2542 0.0230 19 1 12.1310 -3.7796 1.2407 20 7 2.3005 -1.0838 -0.0039 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.6490 -2.3265 0.0061 25 1 6.0831 -0.0649 -0.8910 26 1 6.0791 -0.0566 0.8889 27 1 6.0183 -3.1010 1.2621 28 1 7.7817 -3.3452 1.2675 29 1 7.0709 -1.9725 2.1493 30 1 7.0806 -1.9922 -2.1291 31 1 7.7868 -3.3574 -1.2309 32 1 6.0240 -3.1125 -1.2364 33 1 8.5577 -0.4085 -0.8846 34 1 8.5541 -0.3997 0.8953 35 1 12.1162 -0.0974 0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336635114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:59 Heat of formation + Delta-G solvation = 34.937788 kcal Electronic energy + Delta-G solvation = -16986.613684 eV Core-core repulsion = 14214.793009 eV Total energy + Delta-G solvation = -2771.820674 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.22670 -39.59415 -36.94623 -36.27371 -34.36110 -32.26834 -29.86254 -29.00666 -27.96496 -27.57741 -24.96005 -24.64279 -22.30715 -19.95924 -19.08223 -19.05967 -18.34791 -17.72079 -16.52579 -16.04646 -15.81310 -14.90983 -14.71493 -14.39037 -14.36068 -14.24414 -13.92627 -13.67979 -13.06502 -12.98292 -12.74192 -12.72300 -12.45192 -12.31045 -12.23480 -12.02626 -11.85077 -11.65187 -11.36503 -11.02614 -10.88261 -10.47946 -9.40376 -8.12384 -6.19075 0.45215 1.17967 1.44573 1.45098 1.45712 1.52949 2.40266 2.48117 3.19630 3.22903 3.62857 3.87228 4.03787 4.20897 4.57116 4.65074 4.67263 4.68109 4.68239 4.75015 4.95420 5.02147 5.13491 5.14857 5.20627 5.41893 5.52954 5.53330 5.57303 5.65794 5.80617 5.92274 6.19484 6.33382 6.95763 7.42286 7.48599 8.99597 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.065463 B = 0.004442 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.622144 B = 6301.602691 C = 6527.557453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.432 5.432 4 O 0.013 5.987 5 C 0.435 3.565 6 N -0.643 5.643 7 C 0.137 3.863 8 C -0.061 4.061 9 C -0.126 4.126 10 C -0.126 4.126 11 C 0.040 3.960 12 C -0.515 4.515 13 H 0.071 0.929 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.953 3.047 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.268 1.268 20 N -0.564 5.564 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.437 0.563 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.065 0.935 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.784 -3.352 -0.010 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 N -0.161 5.161 4 O -0.027 6.027 5 C 0.125 3.875 6 N -0.295 5.295 7 C 0.014 3.986 8 C -0.062 4.062 9 C -0.183 4.183 10 C -0.183 4.183 11 C 0.003 3.997 12 C -0.553 4.553 13 H 0.089 0.911 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.779 3.221 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.193 1.193 20 N -0.313 5.313 21 H 0.121 0.879 22 H 0.121 0.879 23 H 0.116 0.884 24 H 0.281 0.719 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.019 -2.590 -0.018 17.215 hybrid contribution 1.581 -0.516 0.003 1.663 sum -15.438 -3.106 -0.015 15.748 Atomic orbital electron populations 1.20325 0.80280 1.05626 1.05452 1.26300 1.01675 0.83001 0.96748 1.74546 0.88567 1.23657 1.29315 1.85325 1.23266 1.22626 1.71502 1.24514 0.89468 0.81826 0.91647 1.43572 0.99411 1.08573 1.77956 1.21702 0.79402 0.95416 1.02121 1.20682 0.93506 0.94989 0.96991 1.21734 1.01199 0.99426 0.95966 1.21738 1.01206 0.99352 0.96021 1.18970 0.90891 0.94836 0.95042 1.21568 0.91073 0.93880 1.48792 0.91126 1.25857 1.01614 0.96818 0.95560 1.70087 1.18825 1.16279 1.52546 0.85677 0.78138 0.79227 0.79063 1.19315 1.21812 1.19329 1.72296 0.97368 1.28228 1.33412 0.87872 0.87899 0.88435 0.71892 0.91416 0.91426 0.91659 0.92525 0.93807 0.93800 0.92529 0.91666 0.98814 0.98814 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.20 5.21 8.20 138.50 1.14 6.34 16 3 N -0.43 -13.34 12.14 -58.80 -0.71 -14.05 16 4 O 0.01 0.41 11.07 71.05 0.79 1.20 16 5 C 0.43 12.73 9.10 179.27 1.63 14.36 16 6 N -0.64 -16.76 5.07 -462.64 -2.34 -19.11 16 7 C 0.14 4.11 4.96 86.38 0.43 4.54 16 8 C -0.06 -2.08 0.54 -52.18 -0.03 -2.11 16 9 C -0.13 -3.93 8.05 71.98 0.58 -3.35 16 10 C -0.13 -3.93 8.05 71.98 0.58 -3.35 16 11 C 0.04 1.89 4.04 29.85 0.12 2.01 16 12 C -0.51 -26.33 7.65 25.60 0.20 -26.13 16 13 H 0.07 3.39 5.68 -2.91 -0.02 3.38 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.94 -54.93 13.29 21.45 0.28 -54.65 16 16 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 N -0.56 -16.20 11.59 -311.94 -3.62 -19.82 16 21 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.44 9.89 6.28 -92.70 -0.58 9.30 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.59 6.86 -2.39 -0.02 1.57 16 28 H 0.06 1.93 6.62 -2.39 -0.02 1.92 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 32 H 0.06 1.58 6.86 -2.39 -0.02 1.57 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -62.72 291.08 2.79 -59.93 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.51 Total: 9.51 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.85 Total: -7.46 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -6.39 Total: -107.62 kcal Atomic # 8 Polarization: 0.41 SS G_CDS: 0.79 Total: 1.20 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -62.72 2.79 -59.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336635114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.866 kcal (2) G-P(sol) polarization free energy of solvation -62.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds