Wall clock time and date at job start Sun Mar 29 2020 22:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.52994 * 109.47293 * 300.00408 * 3 2 1 5 5 C 1.53002 * 109.46911 * 60.00164 * 3 2 1 6 6 N 1.46503 * 109.47274 * 180.02562 * 3 2 1 7 7 N 1.40585 * 127.38783 * 354.48824 * 6 3 2 8 8 N 1.28900 * 106.84275 * 179.97438 * 7 6 3 9 9 N 1.28421 * 110.34898 * 0.02562 * 8 7 6 10 10 C 1.31567 * 110.49909 * 359.73965 * 9 8 7 11 11 N 1.38220 * 126.46048 * 180.30166 * 10 9 8 12 12 C 1.46501 * 120.00280 * 186.70718 * 11 10 9 13 13 C 1.36932 * 119.99899 * 6.70335 * 11 10 9 14 14 H 1.07998 * 119.99949 * 6.39791 * 13 11 10 15 15 C 1.38801 * 120.00099 * 186.39654 * 13 11 10 16 16 N 1.31566 * 119.99821 * 31.06766 * 15 13 11 17 17 Si 1.86801 * 120.00009 * 211.06612 * 15 13 11 18 18 H 1.48494 * 109.47125 * 95.00066 * 17 15 13 19 19 H 1.48506 * 109.46977 * 214.99704 * 17 15 13 20 20 H 1.48493 * 109.47144 * 334.99790 * 17 15 13 21 21 H 1.09000 * 109.47095 * 299.99737 * 1 2 3 22 22 H 1.08998 * 109.47044 * 60.00109 * 1 2 3 23 23 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47357 * 120.00600 * 2 1 3 25 25 H 1.09000 * 109.47095 * 240.00263 * 2 1 3 26 26 H 1.09001 * 109.47680 * 78.89365 * 4 3 2 27 27 H 1.08995 * 109.47242 * 198.89894 * 4 3 2 28 28 H 1.09004 * 109.46991 * 318.89583 * 4 3 2 29 29 H 1.09004 * 109.46938 * 31.80780 * 5 3 2 30 30 H 1.09000 * 109.46818 * 151.80849 * 5 3 2 31 31 H 1.08998 * 109.47200 * 271.80487 * 5 3 2 32 32 H 1.09003 * 109.47160 * 113.87266 * 12 11 10 33 33 H 1.09002 * 109.46869 * 233.87338 * 12 11 10 34 34 H 1.08995 * 109.47178 * 353.86875 * 12 11 10 35 35 H 0.97001 * 120.00106 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2491 5 6 1.5301 2.1637 1.2493 6 7 3.5051 1.4425 -0.0006 7 7 4.3588 0.3306 0.1061 8 7 5.5658 0.7809 0.0617 9 7 5.5613 2.0592 -0.0613 10 6 4.3274 2.5131 -0.1094 11 7 3.9427 3.8339 -0.2437 12 6 2.5283 4.1997 -0.1343 13 6 4.8836 4.8005 -0.4789 14 1 5.9106 4.5211 -0.6623 15 6 4.5175 6.1393 -0.4818 16 7 3.5325 6.5536 0.2857 17 14 5.4234 7.3530 -1.5754 18 1 4.6849 7.5145 -2.8535 19 1 5.5154 8.6660 -0.8876 20 1 6.7900 6.8435 -1.8543 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 0.4922 2.4613 -1.0987 27 1 2.1390 3.0491 -1.4315 28 1 1.5955 1.4947 -2.1072 29 1 1.4395 1.4507 2.0689 30 1 2.2324 2.9496 1.5272 31 1 0.5550 2.6045 1.0418 32 1 2.3795 4.8137 0.7539 33 1 2.2290 4.7618 -1.0190 34 1 1.9242 3.2958 -0.0566 35 1 3.2769 7.4893 0.2840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340343306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:21 Heat of formation + Delta-G solvation = 191.869796 kcal Electronic energy + Delta-G solvation = -18441.150658 eV Core-core repulsion = 15708.427817 eV Total energy + Delta-G solvation = -2732.722841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.67681 -38.71342 -36.23595 -32.57676 -31.63864 -30.59999 -29.67397 -27.41375 -26.47285 -24.42707 -24.11673 -22.37464 -20.41881 -18.85560 -17.42985 -16.83750 -15.56641 -15.37151 -15.02521 -14.61354 -14.39947 -13.78074 -13.41878 -12.90980 -12.73807 -12.37298 -12.29753 -11.93607 -11.71797 -11.35210 -11.27546 -11.11782 -10.98008 -10.79740 -10.70223 -10.49688 -10.35388 -10.06991 -9.63905 -9.34489 -9.28877 -8.86753 -7.51202 -6.58509 -3.90015 2.39561 2.84552 3.09700 3.16976 3.24083 3.80132 3.92239 4.41682 4.54447 4.79186 4.89548 4.96169 5.32346 5.35590 5.42450 5.59100 5.67379 5.81284 5.84376 5.99426 6.05288 6.06172 6.18473 6.26046 6.35359 6.45824 6.53140 6.68180 6.84381 6.98149 7.23655 7.38485 7.85143 8.38706 9.01516 9.19520 10.04989 10.38619 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.008872 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.410753 B = 3155.351092 C = 3767.623815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.193 3.807 4 C -0.200 4.200 5 C -0.176 4.176 6 N -0.445 5.445 7 N -0.159 5.159 8 N -0.038 5.038 9 N -0.400 5.400 10 C 0.455 3.545 11 N -0.396 5.396 12 C 0.043 3.957 13 C -0.305 4.305 14 H 0.115 0.885 15 C 0.035 3.965 16 N -0.857 5.857 17 Si 0.925 3.075 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.264 1.264 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 -4.294 -1.176 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C 0.108 3.892 4 C -0.258 4.258 5 C -0.234 4.234 6 N -0.253 5.253 7 N -0.148 5.148 8 N -0.034 5.034 9 N -0.272 5.272 10 C 0.097 3.903 11 N -0.100 5.100 12 C -0.099 4.099 13 C -0.434 4.434 14 H 0.133 0.867 15 C -0.172 4.172 16 N -0.493 5.493 17 Si 0.751 3.249 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.188 1.188 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.943 -4.878 -1.033 10.239 hybrid contribution -0.562 1.417 -0.478 1.597 sum -9.504 -3.462 -1.511 10.227 Atomic orbital electron populations 1.21848 0.94961 1.01918 1.02214 1.21603 0.95590 0.93637 1.03823 1.20522 0.75288 0.97478 0.95937 1.23286 1.02712 1.03101 0.96658 1.22794 1.02290 1.01497 0.96820 1.50872 1.06206 1.04142 1.64096 1.82045 0.94728 1.06779 1.31286 1.77488 1.14055 1.04027 1.07787 1.74698 1.15376 1.02123 1.34979 1.21525 0.86457 0.84850 0.97434 1.41843 1.06973 0.98542 1.62669 1.23740 0.80954 1.01329 1.03871 1.19841 0.92798 0.84652 1.46085 0.86710 1.25216 0.97731 0.97505 0.96726 1.70196 1.30130 1.17132 1.31862 0.85917 0.80215 0.78867 0.79948 1.20251 1.20891 1.18816 0.92268 0.92329 0.92375 0.90714 0.91017 0.90266 0.87925 0.92208 0.91880 0.90083 0.90435 0.89447 0.92774 0.88116 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.37 37.16 0.35 -1.20 16 2 C -0.11 -1.49 4.36 -26.73 -0.12 -1.61 16 3 C 0.19 3.13 0.83 -131.82 -0.11 3.02 16 4 C -0.20 -2.97 6.67 37.15 0.25 -2.72 16 5 C -0.18 -2.61 6.58 37.16 0.24 -2.37 16 6 N -0.44 -9.45 3.50 -49.12 -0.17 -9.62 16 7 N -0.16 -3.63 13.09 60.35 0.79 -2.84 16 8 N -0.04 -0.94 13.38 60.35 0.81 -0.13 16 9 N -0.40 -10.51 11.57 30.10 0.35 -10.16 16 10 C 0.46 11.12 7.63 -320.36 -2.44 8.67 16 11 N -0.40 -9.61 2.97 -125.97 -0.37 -9.98 16 12 C 0.04 0.88 4.89 59.85 0.29 1.17 16 13 C -0.30 -7.93 9.52 -15.07 -0.14 -8.07 16 14 H 0.12 3.13 7.62 -52.49 -0.40 2.73 16 15 C 0.04 0.86 4.97 -17.46 -0.09 0.78 16 16 N -0.86 -21.11 10.83 55.49 0.60 -20.51 16 17 Si 0.92 19.40 29.65 -169.99 -5.04 14.36 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 21 H 0.06 0.56 7.11 -51.93 -0.37 0.19 16 22 H 0.06 0.55 6.89 -51.93 -0.36 0.20 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 25 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 26 H 0.08 0.92 7.02 -51.93 -0.36 0.56 16 27 H 0.10 1.81 3.65 -54.56 -0.20 1.61 16 28 H 0.06 0.86 7.99 -51.93 -0.42 0.44 16 29 H 0.06 0.87 7.83 -51.93 -0.41 0.46 16 30 H 0.08 1.47 5.25 -51.93 -0.27 1.19 16 31 H 0.08 0.92 7.29 -51.93 -0.38 0.54 16 32 H 0.09 1.95 6.35 -51.93 -0.33 1.62 16 33 H 0.05 1.12 7.52 -51.93 -0.39 0.73 16 34 H 0.10 1.74 0.58 -79.69 -0.05 1.69 16 35 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 LS Contribution 268.91 15.07 4.05 4.05 Total: -1.00 -28.77 268.91 -5.08 -33.86 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.33 Total: 3.30 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.77 Total: -2.33 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 2.00 Total: -53.24 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.04 Total: 14.36 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.77 -5.08 -33.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340343306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.725 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds