Wall clock time and date at job start Sun Mar 29 2020 22:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.52994 * 109.47293 * 300.00408 * 3 2 1 5 5 C 1.53002 * 109.46911 * 60.00164 * 3 2 1 6 6 N 1.46503 * 109.47274 * 180.02562 * 3 2 1 7 7 N 1.40585 * 127.38783 * 354.48824 * 6 3 2 8 8 N 1.28900 * 106.84275 * 179.97438 * 7 6 3 9 9 N 1.28421 * 110.34898 * 0.02562 * 8 7 6 10 10 C 1.31567 * 110.49909 * 359.73965 * 9 8 7 11 11 N 1.38220 * 126.46048 * 180.30166 * 10 9 8 12 12 C 1.46501 * 120.00280 * 186.70718 * 11 10 9 13 13 C 1.36932 * 119.99899 * 6.70335 * 11 10 9 14 14 H 1.07998 * 119.99949 * 6.39791 * 13 11 10 15 15 C 1.38801 * 120.00099 * 186.39654 * 13 11 10 16 16 N 1.31566 * 119.99821 * 31.06766 * 15 13 11 17 17 Si 1.86801 * 120.00009 * 211.06612 * 15 13 11 18 18 H 1.48494 * 109.47125 * 95.00066 * 17 15 13 19 19 H 1.48506 * 109.46977 * 214.99704 * 17 15 13 20 20 H 1.48493 * 109.47144 * 334.99790 * 17 15 13 21 21 H 1.09000 * 109.47095 * 299.99737 * 1 2 3 22 22 H 1.08998 * 109.47044 * 60.00109 * 1 2 3 23 23 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47357 * 120.00600 * 2 1 3 25 25 H 1.09000 * 109.47095 * 240.00263 * 2 1 3 26 26 H 1.09001 * 109.47680 * 78.89365 * 4 3 2 27 27 H 1.08995 * 109.47242 * 198.89894 * 4 3 2 28 28 H 1.09004 * 109.46991 * 318.89583 * 4 3 2 29 29 H 1.09004 * 109.46938 * 31.80780 * 5 3 2 30 30 H 1.09000 * 109.46818 * 151.80849 * 5 3 2 31 31 H 1.08998 * 109.47200 * 271.80487 * 5 3 2 32 32 H 1.09003 * 109.47160 * 113.87266 * 12 11 10 33 33 H 1.09002 * 109.46869 * 233.87338 * 12 11 10 34 34 H 1.08995 * 109.47178 * 353.86875 * 12 11 10 35 35 H 0.97001 * 120.00106 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2491 5 6 1.5301 2.1637 1.2493 6 7 3.5051 1.4425 -0.0006 7 7 4.3588 0.3306 0.1061 8 7 5.5658 0.7809 0.0617 9 7 5.5613 2.0592 -0.0613 10 6 4.3274 2.5131 -0.1094 11 7 3.9427 3.8339 -0.2437 12 6 2.5283 4.1997 -0.1343 13 6 4.8836 4.8005 -0.4789 14 1 5.9106 4.5211 -0.6623 15 6 4.5175 6.1393 -0.4818 16 7 3.5325 6.5536 0.2857 17 14 5.4234 7.3530 -1.5754 18 1 4.6849 7.5145 -2.8535 19 1 5.5154 8.6660 -0.8876 20 1 6.7900 6.8435 -1.8543 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 0.4922 2.4613 -1.0987 27 1 2.1390 3.0491 -1.4315 28 1 1.5955 1.4947 -2.1072 29 1 1.4395 1.4507 2.0689 30 1 2.2324 2.9496 1.5272 31 1 0.5550 2.6045 1.0418 32 1 2.3795 4.8137 0.7539 33 1 2.2290 4.7618 -1.0190 34 1 1.9242 3.2958 -0.0566 35 1 3.2769 7.4893 0.2840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340343306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:21 Heat of formation + Delta-G solvation = 175.175295 kcal Electronic energy + Delta-G solvation = -18441.874586 eV Core-core repulsion = 15708.427817 eV Total energy + Delta-G solvation = -2733.446769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.46929 -40.22432 -37.88993 -34.31565 -33.29990 -32.02871 -31.45077 -28.64609 -28.07557 -26.07871 -25.57951 -24.02435 -22.10511 -20.33180 -19.30188 -18.44156 -17.22935 -17.12164 -16.37654 -16.16965 -15.87114 -15.53554 -14.84955 -14.15703 -14.09595 -13.94201 -13.56899 -13.35412 -13.07617 -12.90542 -12.75346 -12.69220 -12.49104 -12.45425 -12.09753 -11.92297 -11.68261 -11.65484 -11.21703 -11.13016 -10.96469 -10.73069 -9.37885 -8.44306 -5.84280 0.57458 1.17724 1.40647 1.46097 1.58286 1.89952 2.22141 2.67904 2.89372 3.28634 3.65016 3.69985 4.03956 4.26215 4.36254 4.42879 4.46237 4.50371 4.66809 4.73729 4.78189 4.84731 4.91869 4.96837 5.05602 5.15111 5.21809 5.24622 5.32117 5.43778 5.48854 5.56652 6.04906 6.50465 7.13944 7.30080 8.16346 8.51478 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.008872 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.410753 B = 3155.351092 C = 3767.623815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.174 3.826 4 C -0.199 4.199 5 C -0.175 4.175 6 N -0.432 5.432 7 N -0.148 5.148 8 N -0.057 5.057 9 N -0.439 5.439 10 C 0.443 3.557 11 N -0.405 5.405 12 C 0.054 3.946 13 C -0.341 4.341 14 H 0.090 0.910 15 C 0.010 3.990 16 N -0.870 5.870 17 Si 0.987 3.013 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.272 1.272 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.122 0.878 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.137 0.863 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 -4.236 -1.576 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C 0.091 3.909 4 C -0.257 4.257 5 C -0.233 4.233 6 N -0.241 5.241 7 N -0.138 5.138 8 N -0.053 5.053 9 N -0.311 5.311 10 C 0.084 3.916 11 N -0.110 5.110 12 C -0.086 4.086 13 C -0.470 4.470 14 H 0.108 0.892 15 C -0.196 4.196 16 N -0.506 5.506 17 Si 0.810 3.190 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.197 1.197 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.469 -4.830 -1.423 12.525 hybrid contribution 0.146 1.302 -0.306 1.346 sum -11.323 -3.528 -1.729 11.985 Atomic orbital electron populations 1.21842 0.91506 1.03450 1.03494 1.21601 0.98394 0.91274 1.02789 1.21209 0.72338 0.99902 0.97424 1.23274 1.04445 1.01794 0.96143 1.22805 1.03150 1.00800 0.96523 1.51234 1.07857 1.02552 1.62493 1.81895 0.94639 1.07686 1.29554 1.77453 1.14875 1.03772 1.09174 1.74576 1.17368 1.02839 1.36283 1.21591 0.86681 0.85691 0.97590 1.41983 1.07946 0.98090 1.62998 1.23838 0.79735 1.02580 1.02495 1.19766 0.92650 0.85891 1.48696 0.89220 1.25908 0.98578 0.98204 0.96955 1.70245 1.30673 1.17865 1.31804 0.85022 0.78707 0.76837 0.78484 1.19182 1.19941 1.19677 0.90943 0.91016 0.90893 0.91779 0.92110 0.86007 0.90756 0.91546 0.90572 0.93452 0.86509 0.91392 0.93334 0.84630 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.37 71.98 0.67 -1.64 16 2 C -0.10 -2.55 4.36 30.59 0.13 -2.42 16 3 C 0.17 5.28 0.83 3.60 0.00 5.29 16 4 C -0.20 -5.36 6.67 71.98 0.48 -4.88 16 5 C -0.17 -4.74 6.58 71.98 0.47 -4.27 16 6 N -0.43 -18.26 3.50 -309.33 -1.08 -19.34 16 7 N -0.15 -6.78 13.09 37.02 0.48 -6.29 16 8 N -0.06 -2.90 13.38 37.02 0.50 -2.40 16 9 N -0.44 -23.85 11.57 -58.67 -0.68 -24.53 16 10 C 0.44 22.11 7.63 260.63 1.99 24.10 16 11 N -0.41 -20.08 2.97 -552.47 -1.64 -21.73 16 12 C 0.05 2.20 4.89 127.77 0.62 2.83 16 13 C -0.34 -18.28 9.52 84.03 0.80 -17.48 16 14 H 0.09 5.14 7.62 -2.91 -0.02 5.12 16 15 C 0.01 0.47 4.97 84.87 0.42 0.89 16 16 N -0.87 -42.68 10.83 21.65 0.23 -42.45 16 17 Si 0.99 39.74 29.65 68.60 2.03 41.77 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H 0.07 0.99 7.11 -2.39 -0.02 0.98 16 22 H 0.07 0.98 6.89 -2.39 -0.02 0.97 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.73 8.11 -2.39 -0.02 1.71 16 25 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 26 H 0.12 2.24 7.02 -2.39 -0.02 2.22 16 27 H 0.07 2.52 3.65 -4.85 -0.02 2.50 16 28 H 0.07 1.72 7.99 -2.38 -0.02 1.70 16 29 H 0.08 1.88 7.83 -2.39 -0.02 1.86 16 30 H 0.05 1.66 5.25 -2.39 -0.01 1.64 16 31 H 0.12 2.24 7.29 -2.39 -0.02 2.23 16 32 H 0.07 3.03 6.35 -2.39 -0.02 3.02 16 33 H 0.05 2.00 7.52 -2.39 -0.02 1.98 16 34 H 0.14 4.47 0.58 -28.46 -0.02 4.46 16 35 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 Total: -1.00 -64.21 268.91 6.53 -57.69 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.08 Total: 14.85 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.60 Total: 2.43 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -2.19 Total: -116.74 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -64.21 6.53 -57.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340343306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.860 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds