Wall clock time and date at job start Sun Mar 29 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00006 * 2 1 4 4 N 1.46509 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.40076 * 126.03825 * 269.97633 * 4 3 2 6 6 C 1.30842 * 108.20657 * 179.73880 * 5 4 3 7 7 C 1.39872 * 108.19764 * 0.44422 * 6 5 4 8 8 C 1.50703 * 126.03910 * 179.81755 * 7 6 5 9 9 C 1.34951 * 126.03135 * 90.00695 * 4 3 2 10 10 C 1.50693 * 126.13128 * 359.95187 * 9 4 3 11 11 N 1.46907 * 109.47101 * 90.00415 * 10 9 4 12 12 C 1.46900 * 110.99855 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99713 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00096 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00194 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00006 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47121 * 90.00159 * 17 15 13 19 19 H 1.48507 * 109.47109 * 209.99983 * 17 15 13 20 20 H 1.48494 * 109.47080 * 329.99832 * 17 15 13 21 21 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46832 * 299.99555 * 1 2 3 23 23 H 1.08998 * 109.47296 * 59.99484 * 1 2 3 24 24 H 1.09001 * 109.47476 * 60.00650 * 3 2 1 25 25 H 1.09002 * 109.47892 * 300.00121 * 3 2 1 26 26 H 1.07999 * 125.90328 * 180.25854 * 6 5 4 27 27 H 1.09002 * 109.47152 * 269.68807 * 8 7 6 28 28 H 1.09001 * 109.46980 * 149.68908 * 8 7 6 29 29 H 1.09004 * 109.47113 * 29.68888 * 8 7 6 30 30 H 1.09000 * 109.47452 * 210.00342 * 10 9 4 31 31 H 1.09007 * 109.47440 * 330.00669 * 10 9 4 32 32 H 1.00906 * 110.99691 * 303.95596 * 11 10 9 33 33 H 1.08997 * 109.46781 * 299.99529 * 12 11 10 34 34 H 1.08998 * 109.47141 * 60.00267 * 12 11 10 35 35 H 0.96998 * 120.00673 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 7 4.2918 1.1252 1.1337 6 6 5.5332 1.0210 0.7335 7 6 5.5431 1.0259 -0.6652 8 6 6.7640 0.9293 -1.5434 9 6 4.2625 1.1269 -1.0904 10 6 3.8028 1.1622 -2.5251 11 7 3.7620 2.5545 -2.9920 12 6 3.3166 2.6281 -4.3899 13 6 3.2868 4.0683 -4.8325 14 1 3.5708 4.8507 -4.1442 15 6 2.8980 4.3871 -6.1163 16 7 2.5527 3.4345 -6.9545 17 14 2.8618 6.1724 -6.6650 18 1 4.1809 6.5407 -7.2389 19 1 1.8065 6.3525 -7.6943 20 1 2.5689 7.0430 -5.4983 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 6.4005 0.9472 1.3727 27 1 7.1392 1.9305 -1.7555 28 1 6.5007 0.4344 -2.4783 29 1 7.5350 0.3531 -1.0318 30 1 4.4964 0.5920 -3.1430 31 1 2.8070 0.7251 -2.5985 32 1 3.1754 3.1188 -2.3957 33 1 4.0066 2.0679 -5.0210 34 1 2.3174 2.2012 -4.4758 35 1 2.2788 3.6587 -7.8576 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343153883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:39 Heat of formation + Delta-G solvation = 32.340663 kcal Electronic energy + Delta-G solvation = -16956.838214 eV Core-core repulsion = 14184.904920 eV Total energy + Delta-G solvation = -2771.933294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11654 -37.96168 -35.53243 -32.89458 -32.74424 -31.13917 -28.39639 -27.09055 -26.17847 -24.67081 -24.01855 -21.53745 -20.69973 -19.25444 -17.07136 -16.82624 -16.25988 -15.91164 -14.95500 -14.75396 -14.55210 -14.30406 -13.62506 -13.23299 -12.98341 -12.78986 -12.58255 -12.43960 -12.14216 -11.70701 -11.60321 -11.42274 -11.19630 -10.75793 -10.74770 -10.37695 -10.06526 -9.98043 -9.32794 -9.20228 -8.54568 -8.05425 -7.45166 -6.09569 -4.12085 1.92654 2.44316 3.02796 3.28787 3.34804 3.38336 3.85649 4.38196 4.54443 4.83818 4.88225 5.08283 5.14551 5.20537 5.26445 5.32539 5.45340 5.48298 5.64898 5.78309 5.96186 6.14143 6.16772 6.38921 6.54820 6.69267 6.93230 7.09247 7.25045 7.28321 7.69104 7.90114 8.02351 8.22527 8.46278 8.96476 9.53239 11.01408 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.005944 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.386620 B = 4709.712338 C = 5488.647685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.406 6.406 3 C 0.311 3.689 4 N -0.371 5.371 5 N -0.298 5.298 6 C 0.053 3.947 7 C -0.225 4.225 8 C -0.067 4.067 9 C 0.111 3.889 10 C 0.117 3.883 11 N -0.678 5.678 12 C 0.195 3.805 13 C -0.516 4.516 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.092 0.908 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.181 0.819 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.326 0.674 33 H 0.032 0.968 34 H -0.013 1.013 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 -5.891 12.583 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.324 6.324 3 C 0.150 3.850 4 N -0.158 5.158 5 N -0.118 5.118 6 C -0.134 4.134 7 C -0.237 4.237 8 C -0.125 4.125 9 C -0.014 4.014 10 C -0.014 4.014 11 N -0.309 5.309 12 C 0.068 3.932 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.110 0.890 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.198 0.802 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.049 0.951 32 H 0.142 0.858 33 H 0.050 0.950 34 H 0.005 0.995 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.440 -6.002 13.220 14.526 hybrid contribution -0.746 0.851 -0.948 1.477 sum -1.185 -5.151 12.272 13.362 Atomic orbital electron populations 1.22723 0.78913 1.03498 1.00586 1.87861 1.20882 1.28211 1.95491 1.22165 0.75168 0.85170 1.02510 1.48250 1.05131 1.58602 1.03833 1.77267 1.01832 1.24572 1.08090 1.23765 0.95118 0.99859 0.94644 1.19873 0.94528 1.15511 0.93756 1.20031 0.93145 1.01807 0.97536 1.21057 0.90827 0.99271 0.90292 1.20536 0.99521 0.93935 0.87374 1.60737 1.58445 1.05451 1.06257 1.19608 0.93604 0.97742 0.82210 1.21144 1.44636 0.92197 0.97463 0.91903 1.24976 0.95234 0.97699 0.96540 1.69951 1.45411 1.32118 1.06146 0.86468 0.77776 0.84625 0.78357 1.20496 1.21278 1.19870 0.88976 0.93558 0.93213 0.89744 0.89667 0.80166 0.91644 0.92019 0.92567 0.88859 0.95081 0.85760 0.94967 0.99479 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.50 16 2 O -0.41 -5.79 10.93 -35.23 -0.39 -6.17 16 3 C 0.31 4.35 6.87 59.85 0.41 4.76 16 4 N -0.37 -6.21 3.88 -61.89 -0.24 -6.45 16 5 N -0.30 -5.02 12.58 30.63 0.39 -4.63 16 6 C 0.05 0.79 11.96 -17.36 -0.21 0.59 16 7 C -0.23 -3.59 6.10 -105.05 -0.64 -4.23 16 8 C -0.07 -0.92 10.16 36.01 0.37 -0.56 16 9 C 0.11 1.91 6.44 -82.26 -0.53 1.38 16 10 C 0.12 2.13 5.48 -4.98 -0.03 2.10 16 11 N -0.68 -14.28 6.48 -116.34 -0.75 -15.04 16 12 C 0.19 4.94 5.44 -4.97 -0.03 4.91 16 13 C -0.52 -14.30 9.32 -34.44 -0.32 -14.62 16 14 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 15 C 0.06 1.60 5.46 -17.83 -0.10 1.50 16 16 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.09 1.13 7.66 -51.93 -0.40 0.74 16 26 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.86 7.15 -51.93 -0.37 0.49 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.67 7.15 -51.93 -0.37 1.30 16 31 H 0.03 0.56 7.72 -51.93 -0.40 0.16 16 32 H 0.33 6.66 8.71 -39.29 -0.34 6.31 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 34 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -32.04 303.96 -5.89 -37.94 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.23 Total: 1.62 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.13 Total: -51.62 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.39 Total: -6.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.04 -5.89 -37.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343153883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.278 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds