Wall clock time and date at job start Sun Mar 29 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00006 * 2 1 4 4 N 1.46509 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.40076 * 126.03825 * 269.97633 * 4 3 2 6 6 C 1.30842 * 108.20657 * 179.73880 * 5 4 3 7 7 C 1.39872 * 108.19764 * 0.44422 * 6 5 4 8 8 C 1.50703 * 126.03910 * 179.81755 * 7 6 5 9 9 C 1.34951 * 126.03135 * 90.00695 * 4 3 2 10 10 C 1.50693 * 126.13128 * 359.95187 * 9 4 3 11 11 N 1.46907 * 109.47101 * 90.00415 * 10 9 4 12 12 C 1.46900 * 110.99855 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99713 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00096 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00194 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00006 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47121 * 90.00159 * 17 15 13 19 19 H 1.48507 * 109.47109 * 209.99983 * 17 15 13 20 20 H 1.48494 * 109.47080 * 329.99832 * 17 15 13 21 21 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46832 * 299.99555 * 1 2 3 23 23 H 1.08998 * 109.47296 * 59.99484 * 1 2 3 24 24 H 1.09001 * 109.47476 * 60.00650 * 3 2 1 25 25 H 1.09002 * 109.47892 * 300.00121 * 3 2 1 26 26 H 1.07999 * 125.90328 * 180.25854 * 6 5 4 27 27 H 1.09002 * 109.47152 * 269.68807 * 8 7 6 28 28 H 1.09001 * 109.46980 * 149.68908 * 8 7 6 29 29 H 1.09004 * 109.47113 * 29.68888 * 8 7 6 30 30 H 1.09000 * 109.47452 * 210.00342 * 10 9 4 31 31 H 1.09007 * 109.47440 * 330.00669 * 10 9 4 32 32 H 1.00906 * 110.99691 * 303.95596 * 11 10 9 33 33 H 1.08997 * 109.46781 * 299.99529 * 12 11 10 34 34 H 1.08998 * 109.47141 * 60.00267 * 12 11 10 35 35 H 0.96998 * 120.00673 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 7 4.2918 1.1252 1.1337 6 6 5.5332 1.0210 0.7335 7 6 5.5431 1.0259 -0.6652 8 6 6.7640 0.9293 -1.5434 9 6 4.2625 1.1269 -1.0904 10 6 3.8028 1.1622 -2.5251 11 7 3.7620 2.5545 -2.9920 12 6 3.3166 2.6281 -4.3899 13 6 3.2868 4.0683 -4.8325 14 1 3.5708 4.8507 -4.1442 15 6 2.8980 4.3871 -6.1163 16 7 2.5527 3.4345 -6.9545 17 14 2.8618 6.1724 -6.6650 18 1 4.1809 6.5407 -7.2389 19 1 1.8065 6.3525 -7.6943 20 1 2.5689 7.0430 -5.4983 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 6.4005 0.9472 1.3727 27 1 7.1392 1.9305 -1.7555 28 1 6.5007 0.4344 -2.4783 29 1 7.5350 0.3531 -1.0318 30 1 4.4964 0.5920 -3.1430 31 1 2.8070 0.7251 -2.5985 32 1 3.1754 3.1188 -2.3957 33 1 4.0066 2.0679 -5.0210 34 1 2.3174 2.2012 -4.4758 35 1 2.2788 3.6587 -7.8576 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343153883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:39 Heat of formation + Delta-G solvation = 8.215678 kcal Electronic energy + Delta-G solvation = -16957.884352 eV Core-core repulsion = 14184.904920 eV Total energy + Delta-G solvation = -2772.979432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.33601 -38.96536 -37.27492 -34.73248 -34.03216 -32.59828 -29.79616 -28.49588 -27.33908 -25.90050 -25.53778 -23.49340 -21.86726 -20.55078 -18.68681 -18.02350 -17.74141 -16.89458 -16.82207 -16.37410 -15.82065 -15.63357 -14.86313 -14.69981 -14.44116 -14.24587 -13.84130 -13.57499 -13.47554 -13.26306 -13.00577 -12.77422 -12.63950 -12.51930 -12.42909 -12.04806 -11.58361 -11.36435 -10.96750 -10.67394 -10.47336 -9.35066 -9.19379 -8.23335 -6.34389 0.69076 1.30468 1.42361 1.43814 1.54624 1.83573 2.40103 2.86469 3.10588 3.44170 3.47765 3.72705 3.85389 4.01567 4.20869 4.36818 4.42900 4.44948 4.51820 4.62591 4.74361 4.93966 5.03730 5.04873 5.21429 5.29380 5.36966 5.57924 5.66976 5.82721 5.96755 6.09640 6.32620 6.56634 6.69515 6.83416 7.36387 8.88006 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.005944 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.386620 B = 4709.712338 C = 5488.647685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.432 6.432 3 C 0.306 3.694 4 N -0.380 5.380 5 N -0.317 5.317 6 C 0.058 3.942 7 C -0.229 4.229 8 C -0.065 4.065 9 C 0.088 3.912 10 C 0.127 3.873 11 N -0.674 5.674 12 C 0.210 3.790 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.265 1.265 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.219 0.781 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.331 0.669 33 H 0.008 0.992 34 H -0.033 1.033 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -5.188 13.577 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.351 6.351 3 C 0.146 3.854 4 N -0.167 5.167 5 N -0.137 5.137 6 C -0.129 4.129 7 C -0.241 4.241 8 C -0.123 4.123 9 C -0.037 4.037 10 C -0.003 4.003 11 N -0.304 5.304 12 C 0.083 3.917 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.124 0.876 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.121 0.879 25 H 0.103 0.897 26 H 0.236 0.764 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.148 0.852 33 H 0.026 0.974 34 H -0.016 1.016 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.007 -5.306 14.236 15.193 hybrid contribution -0.889 0.558 -1.203 1.597 sum -0.896 -4.748 13.033 13.900 Atomic orbital electron populations 1.22972 0.76812 1.04798 1.01705 1.87822 1.23214 1.28335 1.95695 1.22345 0.74264 0.85452 1.03354 1.48480 1.06022 1.58671 1.03521 1.77229 1.02736 1.25205 1.08523 1.24373 0.95614 0.98302 0.94592 1.20269 0.94645 1.14439 0.94743 1.20073 0.93109 1.01934 0.97213 1.20947 0.91817 1.01223 0.89762 1.20382 0.99482 0.92013 0.88459 1.60590 1.58000 1.07523 1.04333 1.19246 0.91796 0.96401 0.84266 1.21477 1.44826 0.93128 0.97941 0.91885 1.25883 0.94570 1.02318 0.96549 1.70069 1.46053 1.34434 1.06595 0.85361 0.77970 0.79049 0.78090 1.19887 1.20672 1.18896 0.87648 0.91591 0.92907 0.87945 0.89717 0.76421 0.92120 0.92832 0.89567 0.88942 0.95241 0.85243 0.97386 1.01557 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.43 -12.07 10.93 -148.98 -1.63 -13.70 16 3 C 0.31 8.41 6.87 127.77 0.88 9.29 16 4 N -0.38 -12.43 3.88 -450.20 -1.75 -14.18 16 5 N -0.32 -10.20 12.58 -57.02 -0.72 -10.92 16 6 C 0.06 1.59 11.96 85.24 1.02 2.61 16 7 C -0.23 -6.98 6.10 -20.14 -0.12 -7.10 16 8 C -0.07 -1.69 10.16 71.24 0.72 -0.96 16 9 C 0.09 2.99 6.44 41.40 0.27 3.25 16 10 C 0.13 4.68 5.48 85.55 0.47 5.15 16 11 N -0.67 -28.72 6.48 -521.97 -3.38 -32.10 16 12 C 0.21 10.94 5.44 85.56 0.47 11.41 16 13 C -0.54 -29.88 9.32 25.60 0.24 -29.64 16 14 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 15 C 0.01 0.30 5.46 84.65 0.46 0.77 16 16 N -0.93 -55.00 13.29 21.44 0.28 -54.72 16 17 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 21 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.09 2.26 7.66 -2.39 -0.02 2.25 16 26 H 0.22 4.01 8.06 -2.91 -0.02 3.99 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.45 7.15 -2.39 -0.02 1.44 16 29 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 3.38 7.15 -2.39 -0.02 3.36 16 31 H 0.03 1.09 7.72 -2.38 -0.02 1.07 16 32 H 0.33 13.60 8.71 -89.69 -0.78 12.81 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -67.85 303.96 0.78 -67.07 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.30 Total: 16.46 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.65 Total: -3.38 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -5.56 Total: -111.91 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.63 Total: -13.70 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.85 0.78 -67.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343153883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.282 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds