Wall clock time and date at job start Sun Mar 29 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49229 * 2 1 4 4 C 1.53234 * 109.48053 * 239.96826 * 2 1 3 5 5 C 1.51266 * 108.53610 * 185.39355 * 4 2 1 6 6 O 1.20767 * 120.84364 * 231.36969 * 5 4 2 7 7 C 1.51296 * 118.30981 * 51.34642 * 5 4 2 8 8 C 1.53231 * 108.51870 * 308.66048 * 7 5 4 9 9 C 1.52956 * 109.41729 * 54.62295 * 8 7 5 10 10 H 1.09004 * 109.41490 * 56.49632 * 9 8 7 11 11 C 1.50695 * 109.41326 * 176.35736 * 9 8 7 12 12 O 1.21280 * 120.00030 * 35.99889 * 11 9 8 13 13 N 1.34778 * 119.99680 * 215.99596 * 11 9 8 14 14 C 1.46507 * 119.99836 * 179.97438 * 13 11 9 15 15 C 1.50705 * 109.47055 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99557 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99638 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47170 * 59.99682 * 19 17 15 21 21 H 1.48491 * 109.47263 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46993 * 300.00216 * 19 17 15 23 23 H 1.08999 * 109.46596 * 305.83543 * 1 2 3 24 24 H 1.08998 * 109.47506 * 65.83727 * 1 2 3 25 25 H 1.09002 * 109.46565 * 185.84037 * 1 2 3 26 26 H 1.08999 * 109.62644 * 305.10606 * 4 2 1 27 27 H 1.08999 * 109.62604 * 65.48307 * 4 2 1 28 28 H 1.09000 * 109.64276 * 188.94336 * 7 5 4 29 29 H 1.08996 * 109.62416 * 68.36283 * 7 5 4 30 30 H 1.08996 * 109.48020 * 294.63292 * 8 7 5 31 31 H 1.09001 * 109.48051 * 174.60791 * 8 7 5 32 32 H 0.97002 * 120.00558 * 0.02562 * 13 11 9 33 33 H 1.08994 * 109.47053 * 300.00297 * 14 13 11 34 34 H 1.09001 * 109.46535 * 60.00357 * 14 13 11 35 35 H 0.96999 * 119.99583 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7230 -1.2507 5 6 3.5475 -0.8283 -1.1635 6 8 4.2475 -0.4676 -2.0791 7 6 4.1551 -1.3965 0.1003 8 6 3.5671 -0.6490 1.3017 9 6 2.0402 -0.7218 1.2483 10 1 1.7282 -1.7657 1.2162 11 6 1.4642 -0.0644 2.4759 12 8 2.0019 0.9147 2.9483 13 7 0.3514 -0.5645 3.0487 14 6 -0.2083 0.0743 4.2425 15 6 -1.4411 -0.6734 4.6811 16 1 -1.7739 -1.5382 4.1264 17 6 -2.1438 -0.2534 5.7905 18 7 -1.7380 0.7994 6.4663 19 14 -3.6714 -1.1807 6.3347 20 1 -3.3113 -2.5866 6.6490 21 1 -4.2388 -0.5332 7.5445 22 1 -4.6781 -1.1598 5.2432 23 1 -0.3632 0.6017 0.8331 24 1 -0.3634 0.4206 -0.9376 25 1 -0.3632 -1.0224 0.1046 26 1 1.6065 -1.7214 -1.2996 27 1 1.7615 -0.1581 -2.1400 28 1 5.2366 -1.2626 0.0792 29 1 3.9162 -2.4572 0.1764 30 1 3.8827 0.3938 1.2709 31 1 3.9209 -1.1088 2.2245 32 1 -0.0785 -1.3477 2.6711 33 1 0.5305 0.0578 5.0436 34 1 -0.4717 1.1067 4.0123 35 1 -2.2326 1.0950 7.2465 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344017891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:24 Heat of formation + Delta-G solvation = -106.277040 kcal Electronic energy + Delta-G solvation = -17200.939087 eV Core-core repulsion = 14390.702127 eV Total energy + Delta-G solvation = -2810.236960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39794 -38.88559 -36.32926 -34.25230 -32.68509 -32.26725 -29.61892 -27.36471 -26.76141 -23.38433 -22.26688 -21.13248 -19.68840 -19.27315 -17.29128 -15.91118 -15.73294 -15.66595 -15.17012 -14.99348 -14.73414 -14.26109 -13.85515 -13.43208 -12.87135 -12.71871 -12.37526 -12.26910 -12.11185 -11.99764 -11.77645 -11.37988 -11.08414 -11.02493 -10.92559 -10.79959 -10.61344 -10.33511 -9.51281 -9.44336 -8.99869 -8.75799 -7.91409 -6.19271 -4.26527 1.81353 3.22867 3.28154 3.28503 3.29329 3.90981 4.04101 4.33228 4.53516 4.55874 4.79813 4.95221 5.08146 5.16852 5.22153 5.22628 5.40027 5.47168 5.55688 5.62609 5.72682 5.80901 5.93759 6.05933 6.12495 6.23778 6.32779 7.27477 7.34807 7.39711 7.48437 7.62973 7.94335 8.59091 8.74722 9.06384 9.40353 10.90837 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047402 B = 0.004998 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.551683 B = 5601.028622 C = 5835.913448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 H 0.082 0.918 4 C -0.163 4.163 5 C 0.363 3.637 6 O -0.464 6.464 7 C -0.168 4.168 8 C -0.097 4.097 9 C -0.109 4.109 10 H 0.091 0.909 11 C 0.505 3.495 12 O -0.555 6.555 13 N -0.710 5.710 14 C 0.249 3.751 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 -6.392 -12.724 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.201 4.201 5 C 0.239 3.761 6 O -0.338 6.338 7 C -0.206 4.206 8 C -0.135 4.135 9 C -0.131 4.131 10 H 0.109 0.891 11 C 0.290 3.710 12 O -0.434 6.434 13 N -0.357 5.357 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.223 0.777 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.384 -5.363 -12.659 15.158 hybrid contribution -1.181 -0.904 0.343 1.526 sum 5.203 -6.267 -12.316 14.766 Atomic orbital electron populations 1.21941 0.93535 1.02807 1.02838 1.21002 0.96909 0.99877 0.91305 0.89958 1.22401 0.94109 1.03458 1.00094 1.24965 0.91671 0.72573 0.86844 1.90400 1.65493 1.38016 1.39847 1.22346 1.02032 1.01852 0.94397 1.21348 0.93017 1.02031 0.97090 1.21461 0.96475 1.00932 0.94198 0.89121 1.20247 0.81357 0.84720 0.84701 1.90663 1.60981 1.27027 1.64777 1.46549 1.26474 1.31807 1.30902 1.19101 0.93191 0.93604 0.81271 1.21178 1.10436 1.13924 1.12689 0.91972 1.24946 0.97927 0.95038 0.96031 1.69964 1.39746 1.24023 1.18539 0.86485 0.82517 0.79809 0.78157 1.20079 1.21075 1.20067 0.91108 0.92251 0.92046 0.88104 0.89110 0.89157 0.88262 0.90197 0.90187 0.77722 0.95595 0.95571 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.63 37.16 0.32 -1.45 16 2 C -0.07 -0.83 2.29 -90.52 -0.21 -1.04 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.16 -1.54 5.45 -27.48 -0.15 -1.69 16 5 C 0.36 4.07 6.72 -28.47 -0.19 3.88 16 6 O -0.46 -6.76 17.89 5.99 0.11 -6.66 16 7 C -0.17 -1.60 6.17 -27.47 -0.17 -1.77 16 8 C -0.10 -1.15 4.82 -26.63 -0.13 -1.28 16 9 C -0.11 -1.38 2.00 -91.82 -0.18 -1.56 16 10 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 11 C 0.51 9.32 5.65 -10.99 -0.06 9.26 16 12 O -0.56 -12.76 16.36 5.56 0.09 -12.67 16 13 N -0.71 -13.94 5.06 -61.47 -0.31 -14.25 16 14 C 0.25 6.37 5.43 -5.19 -0.03 6.34 16 15 C -0.54 -14.30 9.28 -34.44 -0.32 -14.61 16 16 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 19 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H 0.07 1.04 7.09 -51.93 -0.37 0.67 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.08 7.97 -51.93 -0.41 0.67 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.39 6.50 8.29 -40.82 -0.34 6.16 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 294.12 15.07 4.43 4.43 Total: -1.00 -32.21 294.12 -6.48 -38.69 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.30 Total: 2.26 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.22 Total: -2.26 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.43 Total: -39.18 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.20 Total: -19.33 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.21 -6.48 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.584 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds