Wall clock time and date at job start Sun Mar 29 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49229 * 2 1 4 4 C 1.53234 * 109.48053 * 239.96826 * 2 1 3 5 5 C 1.51266 * 108.53610 * 185.39355 * 4 2 1 6 6 O 1.20767 * 120.84364 * 231.36969 * 5 4 2 7 7 C 1.51296 * 118.30981 * 51.34642 * 5 4 2 8 8 C 1.53231 * 108.51870 * 308.66048 * 7 5 4 9 9 C 1.52956 * 109.41729 * 54.62295 * 8 7 5 10 10 H 1.09004 * 109.41490 * 56.49632 * 9 8 7 11 11 C 1.50695 * 109.41326 * 176.35736 * 9 8 7 12 12 O 1.21280 * 120.00030 * 35.99889 * 11 9 8 13 13 N 1.34778 * 119.99680 * 215.99596 * 11 9 8 14 14 C 1.46507 * 119.99836 * 179.97438 * 13 11 9 15 15 C 1.50705 * 109.47055 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99557 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99638 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47170 * 59.99682 * 19 17 15 21 21 H 1.48491 * 109.47263 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46993 * 300.00216 * 19 17 15 23 23 H 1.08999 * 109.46596 * 305.83543 * 1 2 3 24 24 H 1.08998 * 109.47506 * 65.83727 * 1 2 3 25 25 H 1.09002 * 109.46565 * 185.84037 * 1 2 3 26 26 H 1.08999 * 109.62644 * 305.10606 * 4 2 1 27 27 H 1.08999 * 109.62604 * 65.48307 * 4 2 1 28 28 H 1.09000 * 109.64276 * 188.94336 * 7 5 4 29 29 H 1.08996 * 109.62416 * 68.36283 * 7 5 4 30 30 H 1.08996 * 109.48020 * 294.63292 * 8 7 5 31 31 H 1.09001 * 109.48051 * 174.60791 * 8 7 5 32 32 H 0.97002 * 120.00558 * 0.02562 * 13 11 9 33 33 H 1.08994 * 109.47053 * 300.00297 * 14 13 11 34 34 H 1.09001 * 109.46535 * 60.00357 * 14 13 11 35 35 H 0.96999 * 119.99583 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7230 -1.2507 5 6 3.5475 -0.8283 -1.1635 6 8 4.2475 -0.4676 -2.0791 7 6 4.1551 -1.3965 0.1003 8 6 3.5671 -0.6490 1.3017 9 6 2.0402 -0.7218 1.2483 10 1 1.7282 -1.7657 1.2162 11 6 1.4642 -0.0644 2.4759 12 8 2.0019 0.9147 2.9483 13 7 0.3514 -0.5645 3.0487 14 6 -0.2083 0.0743 4.2425 15 6 -1.4411 -0.6734 4.6811 16 1 -1.7739 -1.5382 4.1264 17 6 -2.1438 -0.2534 5.7905 18 7 -1.7380 0.7994 6.4663 19 14 -3.6714 -1.1807 6.3347 20 1 -3.3113 -2.5866 6.6490 21 1 -4.2388 -0.5332 7.5445 22 1 -4.6781 -1.1598 5.2432 23 1 -0.3632 0.6017 0.8331 24 1 -0.3634 0.4206 -0.9376 25 1 -0.3632 -1.0224 0.1046 26 1 1.6065 -1.7214 -1.2996 27 1 1.7615 -0.1581 -2.1400 28 1 5.2366 -1.2626 0.0792 29 1 3.9162 -2.4572 0.1764 30 1 3.8827 0.3938 1.2709 31 1 3.9209 -1.1088 2.2245 32 1 -0.0785 -1.3477 2.6711 33 1 0.5305 0.0578 5.0436 34 1 -0.4717 1.1067 4.0123 35 1 -2.2326 1.0950 7.2465 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344017891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:23 Heat of formation + Delta-G solvation = -128.924172 kcal Electronic energy + Delta-G solvation = -17201.921140 eV Core-core repulsion = 14390.702127 eV Total energy + Delta-G solvation = -2811.219013 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52265 -40.18834 -37.50694 -36.12185 -34.33641 -33.48917 -30.79390 -29.01422 -27.85786 -25.06002 -23.50149 -22.33318 -21.16191 -20.19961 -18.95319 -17.57884 -17.07088 -16.74843 -16.58152 -16.21709 -15.95794 -15.65743 -15.13371 -14.87666 -14.21446 -13.98227 -13.82446 -13.63460 -13.27836 -13.16696 -12.93966 -12.85801 -12.66451 -12.43230 -12.22096 -12.00772 -11.78721 -11.57744 -11.48490 -10.76741 -10.59090 -10.40976 -9.78026 -8.26813 -6.43228 0.94542 1.45175 1.48759 1.56905 1.78258 2.34071 2.60700 3.08442 3.15412 3.56429 3.64440 3.78500 3.98202 4.24464 4.27383 4.35151 4.42044 4.52143 4.65940 4.75703 4.89465 4.93210 5.03377 5.14051 5.16518 5.24345 5.26705 5.29145 5.38626 5.52211 5.73315 5.87803 6.49868 6.68285 6.95822 7.26462 7.54538 8.85143 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047402 B = 0.004998 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.551683 B = 5601.028622 C = 5835.913448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 H 0.056 0.944 4 C -0.152 4.152 5 C 0.364 3.636 6 O -0.502 6.502 7 C -0.158 4.158 8 C -0.095 4.095 9 C -0.096 4.096 10 H 0.134 0.866 11 C 0.503 3.497 12 O -0.608 6.608 13 N -0.701 5.701 14 C 0.266 3.734 15 C -0.553 4.553 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.289 1.289 22 H -0.261 1.261 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.409 0.591 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -9.550 -14.311 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.189 4.189 5 C 0.243 3.757 6 O -0.379 6.379 7 C -0.195 4.195 8 C -0.133 4.133 9 C -0.117 4.117 10 H 0.152 0.848 11 C 0.291 3.709 12 O -0.490 6.490 13 N -0.350 5.350 14 C 0.143 3.857 15 C -0.591 4.591 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.214 1.214 22 H -0.186 1.186 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.154 0.846 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.314 -8.563 -14.285 17.482 hybrid contribution -0.795 0.151 0.841 1.167 sum 4.520 -8.412 -13.444 16.490 Atomic orbital electron populations 1.21931 0.93203 1.03688 1.02126 1.20925 0.97079 0.98794 0.91833 0.92584 1.22361 0.92763 1.05236 0.98555 1.25379 0.92442 0.71197 0.86662 1.90404 1.66405 1.39713 1.41378 1.22314 1.01927 1.03361 0.91914 1.21300 0.92455 1.01006 0.98562 1.21514 0.96624 1.02566 0.91046 0.84830 1.21347 0.80144 0.83828 0.85624 1.90641 1.62264 1.29509 1.66564 1.46252 1.27071 1.32268 1.29445 1.18511 0.92606 0.92227 0.82378 1.21594 1.10221 1.14368 1.12887 0.89578 1.26051 1.01619 0.95811 0.96091 1.70139 1.41613 1.26156 1.19253 0.85235 0.77958 0.78554 0.77649 1.18578 1.21433 1.18599 0.95003 0.90568 0.89583 0.84325 0.88614 0.88905 0.84553 0.92907 0.90079 0.75479 0.99694 0.99785 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.63 71.98 0.62 -2.55 16 2 C -0.07 -1.42 2.29 -10.73 -0.02 -1.44 16 3 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.15 -2.31 5.45 30.11 0.16 -2.14 16 5 C 0.36 7.19 6.72 29.47 0.20 7.39 16 6 O -0.50 -13.89 17.89 -1.47 -0.03 -13.91 16 7 C -0.16 -2.50 6.17 30.11 0.19 -2.31 16 8 C -0.10 -2.12 4.82 30.66 0.15 -1.97 16 9 C -0.10 -2.24 2.00 -11.57 -0.02 -2.26 16 10 H 0.13 2.03 8.10 -2.38 -0.02 2.01 16 11 C 0.50 18.75 5.65 87.66 0.49 19.25 16 12 O -0.61 -29.43 16.36 -3.03 -0.05 -29.48 16 13 N -0.70 -27.59 5.06 -466.77 -2.36 -29.95 16 14 C 0.27 14.18 5.43 85.63 0.46 14.64 16 15 C -0.55 -29.06 9.28 25.60 0.24 -28.82 16 16 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 17 C 0.00 0.20 5.46 84.65 0.46 0.67 16 18 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 19 Si 0.98 41.24 29.54 68.60 2.03 43.27 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H 0.03 0.91 7.09 -2.39 -0.02 0.90 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.46 7.97 -2.39 -0.02 1.44 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.41 12.81 8.29 -92.71 -0.77 12.04 16 33 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -75.02 294.12 3.11 -71.90 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.31 Total: 13.15 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 2.93 Total: 0.44 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.08 Total: -85.37 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.08 Total: -43.39 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -75.02 3.11 -71.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.020 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds