Wall clock time and date at job start Sun Mar 29 2020 21:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48895 * 2 1 4 4 C 1.53240 * 109.53819 * 240.00360 * 2 1 3 5 5 C 1.51270 * 108.48413 * 294.71249 * 4 2 1 6 6 O 1.20762 * 120.84699 * 128.63055 * 5 4 2 7 7 C 1.51266 * 118.30300 * 308.62133 * 5 4 2 8 8 C 1.53234 * 108.53973 * 51.33851 * 7 5 4 9 9 C 1.52954 * 109.48765 * 120.03818 * 2 1 3 10 10 H 1.08996 * 109.41954 * 176.41697 * 9 2 1 11 11 C 1.50700 * 109.41055 * 296.27689 * 9 2 1 12 12 O 1.21278 * 120.00429 * 0.13903 * 11 9 2 13 13 N 1.34778 * 119.99743 * 180.13985 * 11 9 2 14 14 C 1.46507 * 120.00131 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47006 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00449 * 359.72165 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 H 1.09007 * 109.46758 * 299.95737 * 1 2 3 24 24 H 1.08996 * 109.47118 * 59.96008 * 1 2 3 25 25 H 1.08998 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.68700 * 175.00491 * 4 2 1 27 27 H 1.08994 * 109.78180 * 54.48822 * 4 2 1 28 28 H 1.09000 * 109.62527 * 291.62902 * 7 5 4 29 29 H 1.08997 * 109.78786 * 171.15213 * 7 5 4 30 30 H 1.09000 * 109.47934 * 185.39561 * 8 7 5 31 31 H 1.09001 * 109.49057 * 65.36556 * 8 7 5 32 32 H 0.97004 * 120.00319 * 359.97438 * 13 11 9 33 33 H 1.08998 * 109.47049 * 59.99555 * 14 13 11 34 34 H 1.09001 * 109.46896 * 299.99826 * 14 13 11 35 35 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0425 -0.7220 -1.2507 5 6 1.6377 -2.1770 -1.1643 6 8 1.0647 -2.7157 -2.0807 7 6 1.9690 -2.9398 0.0992 8 6 1.4607 -2.1363 1.3009 9 6 2.0403 -0.7218 1.2483 10 1 3.1284 -0.7771 1.2156 11 6 1.6142 0.0401 2.4767 12 8 0.9644 1.0579 2.3640 13 7 1.9552 -0.4097 3.7006 14 6 1.5415 0.3312 4.8948 15 6 2.0470 -0.3767 6.1254 16 1 2.6153 -1.2898 6.0279 17 6 1.7793 0.1385 7.3760 18 7 1.0877 1.2508 7.4947 19 14 2.3994 -0.7432 8.9016 20 1 3.1451 -1.9627 8.4998 21 1 3.2993 0.1594 9.6636 22 1 1.2458 -1.1273 9.7544 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 0.5144 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1289 -0.6467 -1.2990 27 1 1.6044 -0.2724 -2.1417 28 1 3.0485 -3.0697 0.1759 29 1 1.4835 -3.9154 0.0792 30 1 1.7752 -2.6241 2.2235 31 1 0.3723 -2.0847 1.2697 32 1 2.4746 -1.2240 3.7908 33 1 0.4535 0.3876 4.9287 34 1 1.9565 1.3385 4.8594 35 1 0.8997 1.6135 8.3745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344017914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:25 Heat of formation + Delta-G solvation = -101.132868 kcal Electronic energy + Delta-G solvation = -17271.014350 eV Core-core repulsion = 14461.000458 eV Total energy + Delta-G solvation = -2810.013892 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55635 -38.87658 -36.35715 -34.29960 -32.58888 -31.86793 -29.57970 -27.68010 -26.55692 -23.24368 -22.81381 -21.33748 -19.70006 -18.48241 -17.28172 -16.23756 -15.76067 -15.49440 -15.14666 -15.02934 -14.46593 -14.20133 -14.06599 -13.57358 -13.19440 -12.72599 -12.50227 -12.05699 -11.93730 -11.86158 -11.59246 -11.49972 -11.03472 -11.00252 -10.84379 -10.75713 -10.50111 -10.33392 -9.46873 -9.41074 -8.94810 -8.76715 -7.91515 -6.20209 -4.27185 1.84604 3.20927 3.28272 3.28735 3.30975 3.92114 4.06370 4.33096 4.49877 4.64028 4.84363 4.95705 5.04823 5.16272 5.17905 5.31960 5.33669 5.54454 5.62091 5.70102 5.76208 5.80593 5.92497 6.06805 6.16837 6.34897 6.59664 7.27047 7.37389 7.40093 7.47924 7.62736 7.93567 8.58364 8.74340 9.05822 9.39801 10.90001 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045657 B = 0.005073 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.125207 B = 5518.180954 C = 5924.764736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 H 0.090 0.910 4 C -0.167 4.167 5 C 0.365 3.635 6 O -0.465 6.465 7 C -0.168 4.168 8 C -0.109 4.109 9 C -0.111 4.111 10 H 0.097 0.903 11 C 0.503 3.497 12 O -0.550 6.550 13 N -0.711 5.711 14 C 0.249 3.751 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -6.541 -13.229 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.081 4.081 3 H 0.108 0.892 4 C -0.204 4.204 5 C 0.241 3.759 6 O -0.339 6.339 7 C -0.206 4.206 8 C -0.147 4.147 9 C -0.132 4.132 10 H 0.115 0.885 11 C 0.288 3.712 12 O -0.430 6.430 13 N -0.359 5.359 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.058 -5.955 -13.610 15.167 hybrid contribution 0.676 -0.755 1.080 1.481 sum 3.735 -6.709 -12.529 14.695 Atomic orbital electron populations 1.22113 0.94370 1.01492 1.03788 1.20821 0.97042 0.99663 0.90557 0.89157 1.22436 1.03162 0.94259 1.00587 1.24919 0.73734 0.90441 0.86795 1.90395 1.31816 1.71793 1.39848 1.22313 1.03789 1.00101 0.94376 1.21586 1.02099 0.93350 0.97690 1.21441 1.01962 0.95458 0.94376 0.88455 1.20276 0.80635 0.85607 0.84701 1.90620 1.40144 1.25539 1.86648 1.46493 1.54398 1.28272 1.06711 1.19112 0.95996 0.92125 0.79958 1.21257 1.36042 1.10177 0.90681 0.91873 1.24953 0.94842 0.94945 0.99257 1.69983 1.38313 1.19763 1.24198 0.86370 0.78607 0.79527 0.82463 1.19635 1.20793 1.20798 0.89341 0.92950 0.93454 0.88375 0.89186 0.88155 0.89155 0.89856 0.90326 0.77741 0.95551 0.95528 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.31 37.16 0.31 -1.87 16 2 C -0.06 -0.75 2.32 -90.52 -0.21 -0.96 16 3 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 4 C -0.17 -1.64 5.66 -27.48 -0.16 -1.79 16 5 C 0.37 4.12 5.75 -28.48 -0.16 3.95 16 6 O -0.46 -6.80 17.89 6.00 0.11 -6.69 16 7 C -0.17 -1.55 6.17 -27.48 -0.17 -1.72 16 8 C -0.11 -1.19 4.88 -26.63 -0.13 -1.32 16 9 C -0.11 -1.38 2.20 -91.82 -0.20 -1.58 16 10 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.50 9.13 6.87 -10.98 -0.08 9.05 16 12 O -0.55 -12.13 13.87 5.56 0.08 -12.05 16 13 N -0.71 -13.93 5.42 -61.47 -0.33 -14.27 16 14 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 15 C -0.54 -14.30 9.28 -34.44 -0.32 -14.62 16 16 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 19 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.09 1.47 5.83 -51.92 -0.30 1.16 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.62 5.60 -51.93 -0.29 0.33 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16 31 H 0.08 0.95 6.19 -51.93 -0.32 0.63 16 32 H 0.39 6.48 7.68 -40.82 -0.31 6.16 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.85 285.41 -6.32 -38.17 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.95 Total: 2.95 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.24 Total: -2.91 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.40 Total: -39.17 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.85 -6.32 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.965 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds