Wall clock time and date at job start Sun Mar 29 2020 21:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48895 * 2 1 4 4 C 1.53240 * 109.53819 * 240.00360 * 2 1 3 5 5 C 1.51270 * 108.48413 * 294.71249 * 4 2 1 6 6 O 1.20762 * 120.84699 * 128.63055 * 5 4 2 7 7 C 1.51266 * 118.30300 * 308.62133 * 5 4 2 8 8 C 1.53234 * 108.53973 * 51.33851 * 7 5 4 9 9 C 1.52954 * 109.48765 * 120.03818 * 2 1 3 10 10 H 1.08996 * 109.41954 * 176.41697 * 9 2 1 11 11 C 1.50700 * 109.41055 * 296.27689 * 9 2 1 12 12 O 1.21278 * 120.00429 * 0.13903 * 11 9 2 13 13 N 1.34778 * 119.99743 * 180.13985 * 11 9 2 14 14 C 1.46507 * 120.00131 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47006 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00449 * 359.72165 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 H 1.09007 * 109.46758 * 299.95737 * 1 2 3 24 24 H 1.08996 * 109.47118 * 59.96008 * 1 2 3 25 25 H 1.08998 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.68700 * 175.00491 * 4 2 1 27 27 H 1.08994 * 109.78180 * 54.48822 * 4 2 1 28 28 H 1.09000 * 109.62527 * 291.62902 * 7 5 4 29 29 H 1.08997 * 109.78786 * 171.15213 * 7 5 4 30 30 H 1.09000 * 109.47934 * 185.39561 * 8 7 5 31 31 H 1.09001 * 109.49057 * 65.36556 * 8 7 5 32 32 H 0.97004 * 120.00319 * 359.97438 * 13 11 9 33 33 H 1.08998 * 109.47049 * 59.99555 * 14 13 11 34 34 H 1.09001 * 109.46896 * 299.99826 * 14 13 11 35 35 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0425 -0.7220 -1.2507 5 6 1.6377 -2.1770 -1.1643 6 8 1.0647 -2.7157 -2.0807 7 6 1.9690 -2.9398 0.0992 8 6 1.4607 -2.1363 1.3009 9 6 2.0403 -0.7218 1.2483 10 1 3.1284 -0.7771 1.2156 11 6 1.6142 0.0401 2.4767 12 8 0.9644 1.0579 2.3640 13 7 1.9552 -0.4097 3.7006 14 6 1.5415 0.3312 4.8948 15 6 2.0470 -0.3767 6.1254 16 1 2.6153 -1.2898 6.0279 17 6 1.7793 0.1385 7.3760 18 7 1.0877 1.2508 7.4947 19 14 2.3994 -0.7432 8.9016 20 1 3.1451 -1.9627 8.4998 21 1 3.2993 0.1594 9.6636 22 1 1.2458 -1.1273 9.7544 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 0.5144 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1289 -0.6467 -1.2990 27 1 1.6044 -0.2724 -2.1417 28 1 3.0485 -3.0697 0.1759 29 1 1.4835 -3.9154 0.0792 30 1 1.7752 -2.6241 2.2235 31 1 0.3723 -2.0847 1.2697 32 1 2.4746 -1.2240 3.7908 33 1 0.4535 0.3876 4.9287 34 1 1.9565 1.3385 4.8594 35 1 0.8997 1.6135 8.3745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344017914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:25 Heat of formation + Delta-G solvation = -123.452762 kcal Electronic energy + Delta-G solvation = -17271.982213 eV Core-core repulsion = 14461.000458 eV Total energy + Delta-G solvation = -2810.981755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65243 -40.16022 -37.53506 -36.10984 -34.40377 -32.92681 -30.74167 -29.15690 -27.97627 -24.81790 -24.01079 -22.56035 -21.14337 -19.54369 -18.78887 -17.69152 -17.18512 -16.83989 -16.38847 -16.21501 -15.89420 -15.55753 -15.23160 -14.68790 -14.62273 -14.12851 -13.98860 -13.55098 -13.31392 -12.90297 -12.82412 -12.75798 -12.58919 -12.55835 -12.20054 -12.00106 -11.75833 -11.45917 -11.41087 -10.79170 -10.48576 -10.34697 -9.74609 -8.27507 -6.43447 0.98555 1.45070 1.45532 1.58949 1.82757 2.34185 2.62342 3.08069 3.19025 3.54635 3.71301 3.84986 4.00384 4.22900 4.29673 4.30212 4.42977 4.55947 4.73000 4.79340 4.85437 4.92402 5.08201 5.13507 5.16512 5.20096 5.28230 5.37850 5.42769 5.55230 5.75255 5.88600 6.53161 6.68932 6.97686 7.26515 7.57155 8.84835 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045657 B = 0.005073 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.125207 B = 5518.180954 C = 5924.764736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.060 4.060 3 H 0.083 0.917 4 C -0.157 4.157 5 C 0.366 3.634 6 O -0.503 6.503 7 C -0.158 4.158 8 C -0.106 4.106 9 C -0.097 4.097 10 H 0.137 0.863 11 C 0.499 3.501 12 O -0.594 6.594 13 N -0.706 5.706 14 C 0.266 3.734 15 C -0.552 4.552 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.982 3.018 20 H -0.251 1.251 21 H -0.280 1.280 22 H -0.282 1.282 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.134 0.866 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.408 0.592 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -8.845 -13.625 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.079 4.079 3 H 0.101 0.899 4 C -0.195 4.195 5 C 0.245 3.755 6 O -0.380 6.380 7 C -0.196 4.196 8 C -0.144 4.144 9 C -0.118 4.118 10 H 0.155 0.845 11 C 0.286 3.714 12 O -0.476 6.476 13 N -0.356 5.356 14 C 0.143 3.857 15 C -0.590 4.590 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.174 1.174 21 H -0.206 1.206 22 H -0.207 1.207 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.151 0.849 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.399 -8.293 -14.034 17.172 hybrid contribution -0.104 0.033 1.154 1.159 sum 5.295 -8.260 -12.880 16.192 Atomic orbital electron populations 1.22063 0.96073 1.01189 1.02343 1.20784 0.95643 0.99778 0.91693 0.89875 1.22395 1.05255 0.92927 0.98910 1.25338 0.72332 0.91001 0.86872 1.90400 1.33504 1.72635 1.41423 1.22301 1.06024 0.99397 0.91847 1.21560 1.00997 0.92466 0.99393 1.21465 1.04238 0.95298 0.90783 0.84497 1.21368 0.79121 0.85197 0.85679 1.90614 1.41803 1.27836 1.87344 1.46208 1.55011 1.28648 1.05707 1.18514 0.93222 0.91220 0.82786 1.21666 1.35785 1.10721 0.90824 0.89659 1.26046 0.94819 0.95586 1.03163 1.70146 1.39991 1.21822 1.25172 0.85143 0.77955 0.78726 0.77593 1.17430 1.20611 1.20742 0.92990 0.92133 0.93184 0.84857 0.89104 0.84540 0.88661 0.88529 0.92251 0.75567 0.99729 0.99510 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 8.31 71.98 0.60 -3.77 16 2 C -0.06 -1.35 2.32 -10.73 -0.02 -1.37 16 3 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 4 C -0.16 -2.59 5.66 30.11 0.17 -2.42 16 5 C 0.37 7.16 5.75 29.46 0.17 7.33 16 6 O -0.50 -13.78 17.89 -1.46 -0.03 -13.81 16 7 C -0.16 -2.28 6.17 30.11 0.19 -2.10 16 8 C -0.11 -2.02 4.88 30.66 0.15 -1.87 16 9 C -0.10 -2.18 2.20 -11.57 -0.03 -2.20 16 10 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 11 C 0.50 18.07 6.87 87.66 0.60 18.67 16 12 O -0.59 -27.35 13.87 -3.02 -0.04 -27.39 16 13 N -0.71 -27.55 5.42 -466.78 -2.53 -30.08 16 14 C 0.27 14.07 5.43 85.63 0.46 14.54 16 15 C -0.55 -29.03 9.28 25.60 0.24 -28.80 16 16 H 0.09 4.01 7.60 -2.92 -0.02 3.99 16 17 C 0.00 0.18 5.46 84.66 0.46 0.64 16 18 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 19 Si 0.98 41.36 29.54 68.60 2.03 43.39 16 20 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 23 H 0.05 1.81 5.83 -2.38 -0.01 1.80 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.31 5.60 -2.39 -0.01 1.29 16 26 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.62 7.45 -2.39 -0.02 1.60 16 31 H 0.06 1.37 6.19 -2.39 -0.01 1.36 16 32 H 0.41 12.73 7.68 -92.71 -0.71 12.02 16 33 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -73.27 285.41 3.09 -70.19 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.38 Total: 14.30 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 2.99 Total: -1.34 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.24 Total: -85.34 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.07 Total: -41.20 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -73.27 3.09 -70.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.265 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds