Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53236 * 109.47938 * 120.02866 * 2 1 3 5 5 C 1.51265 * 108.53501 * 65.37990 * 4 2 1 6 6 O 1.20765 * 120.83462 * 231.34581 * 5 4 2 7 7 C 1.51269 * 118.31229 * 51.32662 * 5 4 2 8 8 C 1.53225 * 108.53508 * 308.65892 * 7 5 4 9 9 C 1.52953 * 109.48258 * 239.96982 * 2 1 3 10 10 H 1.09007 * 109.41690 * 183.57211 * 9 2 1 11 11 C 1.50704 * 109.41678 * 63.71671 * 9 2 1 12 12 O 1.21282 * 119.99140 * 359.97438 * 11 9 2 13 13 N 1.34767 * 120.00669 * 179.97438 * 11 9 2 14 14 C 1.46499 * 120.00209 * 179.97438 * 13 11 9 15 15 C 1.50709 * 109.46888 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99335 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00475 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99521 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46915 * 89.99935 * 19 17 15 21 21 H 1.48497 * 109.47110 * 209.99921 * 19 17 15 22 22 H 1.48496 * 109.46846 * 330.00141 * 19 17 15 23 23 H 1.09002 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47062 * 300.00305 * 1 2 3 25 25 H 1.08997 * 109.46656 * 60.00258 * 1 2 3 26 26 H 1.08999 * 109.62424 * 185.08335 * 4 2 1 27 27 H 1.08999 * 109.62149 * 305.64928 * 4 2 1 28 28 H 1.09008 * 109.62116 * 188.94429 * 7 5 4 29 29 H 1.08990 * 109.78337 * 68.47155 * 7 5 4 30 30 H 1.09004 * 109.48416 * 294.65094 * 8 7 5 31 31 H 1.08995 * 109.49400 * 174.61607 * 8 7 5 32 32 H 0.97002 * 119.99715 * 359.97438 * 13 11 9 33 33 H 1.08998 * 109.46696 * 299.99324 * 14 13 11 34 34 H 1.08998 * 109.47552 * 59.99870 * 14 13 11 35 35 H 0.97003 * 120.00199 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0410 -0.7230 1.2507 5 6 1.6381 -2.1783 1.1632 6 8 1.0648 -2.7180 2.0790 7 6 1.9711 -2.9402 -0.1004 8 6 1.4623 -2.1368 -1.3019 9 6 2.0402 -0.7216 -1.2484 10 1 3.1283 -0.7768 -1.2158 11 6 1.6139 0.0403 -2.4768 12 8 0.9659 1.0592 -2.3637 13 7 1.9528 -0.4105 -3.7008 14 6 1.5379 0.3299 -4.8949 15 6 2.0400 -0.3800 -6.1258 16 1 2.6114 -1.2913 -6.0283 17 6 1.7708 0.1345 -7.3763 18 7 1.0755 1.2444 -7.4950 19 14 2.3938 -0.7450 -8.9021 20 1 1.3757 -1.7249 -9.3589 21 1 2.6436 0.2473 -9.9782 22 1 3.6571 -1.4567 -8.5819 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 3.1272 -0.6462 1.2998 27 1 1.5989 -0.2732 2.1398 28 1 1.4840 -3.9152 -0.0791 29 1 3.0502 -3.0718 -0.1783 30 1 0.3739 -2.0864 -1.2710 31 1 1.7776 -2.6236 -2.2248 32 1 2.4714 -1.2253 -3.7911 33 1 0.4499 0.3868 -4.9272 34 1 1.9536 1.3369 -4.8608 35 1 0.8857 1.6062 -8.3748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344017916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = -101.117811 kcal Electronic energy + Delta-G solvation = -17271.113906 eV Core-core repulsion = 14461.100667 eV Total energy + Delta-G solvation = -2810.013239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55547 -38.87641 -36.35646 -34.29994 -32.59097 -31.87071 -29.57839 -27.67683 -26.55577 -23.24314 -22.81321 -21.33795 -19.70000 -18.47998 -17.28094 -16.23589 -15.75810 -15.49548 -15.14585 -15.02914 -14.46707 -14.20186 -14.06698 -13.57561 -13.19476 -12.72411 -12.50353 -12.04766 -11.93621 -11.86201 -11.59128 -11.49901 -11.05180 -10.98633 -10.84517 -10.75677 -10.50059 -10.33023 -9.47069 -9.42550 -8.94775 -8.76177 -7.91480 -6.19875 -4.27040 1.84532 3.21785 3.28180 3.28753 3.30266 3.92173 4.06433 4.33228 4.49885 4.63923 4.84368 4.95602 5.04975 5.16486 5.18043 5.32050 5.33717 5.54380 5.62125 5.70220 5.76139 5.80586 5.92527 6.06795 6.16830 6.34946 6.59693 7.27002 7.37347 7.40069 7.48035 7.62586 7.93745 8.58350 8.74267 9.05828 9.39934 10.90262 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045624 B = 0.005074 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.566966 B = 5516.732161 C = 5923.498100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 H 0.090 0.910 4 C -0.167 4.167 5 C 0.365 3.635 6 O -0.465 6.465 7 C -0.168 4.168 8 C -0.109 4.109 9 C -0.111 4.111 10 H 0.097 0.903 11 C 0.503 3.497 12 O -0.550 6.550 13 N -0.711 5.711 14 C 0.249 3.751 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -6.520 13.221 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.081 4.081 3 H 0.109 0.891 4 C -0.205 4.205 5 C 0.241 3.759 6 O -0.338 6.338 7 C -0.206 4.206 8 C -0.147 4.147 9 C -0.132 4.132 10 H 0.115 0.885 11 C 0.288 3.712 12 O -0.430 6.430 13 N -0.359 5.359 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.223 0.777 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.083 -5.927 13.600 15.152 hybrid contribution 0.676 -0.767 -1.079 1.486 sum 3.759 -6.694 12.521 14.687 Atomic orbital electron populations 1.22112 0.94381 1.01493 1.03780 1.20824 0.97045 0.99659 0.90563 0.89142 1.22437 1.03164 0.94253 1.00597 1.24916 0.73735 0.90450 0.86780 1.90396 1.31803 1.71777 1.39871 1.22313 1.03792 1.00104 0.94370 1.21583 1.02104 0.93347 0.97692 1.21442 1.01969 0.95450 0.94380 0.88463 1.20276 0.80625 0.85622 0.84701 1.90622 1.40210 1.25479 1.86650 1.46487 1.54444 1.28227 1.06704 1.19108 0.95997 0.92111 0.79944 1.21220 1.36074 1.10255 0.90683 0.91929 1.24946 0.94857 0.94913 0.99239 1.69968 1.38146 1.19845 1.24302 0.86427 0.79158 0.79266 0.82133 1.20454 1.21000 1.19747 0.93455 0.92949 0.89355 0.88363 0.89181 0.89176 0.88129 0.90336 0.89851 0.77744 0.95545 0.95539 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.31 37.16 0.31 -1.87 16 2 C -0.06 -0.75 2.33 -90.52 -0.21 -0.96 16 3 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 4 C -0.17 -1.64 5.65 -27.48 -0.16 -1.80 16 5 C 0.37 4.12 5.75 -28.48 -0.16 3.95 16 6 O -0.46 -6.80 17.89 5.99 0.11 -6.69 16 7 C -0.17 -1.55 6.17 -27.49 -0.17 -1.72 16 8 C -0.11 -1.19 4.88 -26.64 -0.13 -1.32 16 9 C -0.11 -1.38 2.20 -91.82 -0.20 -1.59 16 10 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.50 9.13 6.87 -10.99 -0.08 9.06 16 12 O -0.55 -12.14 13.88 5.56 0.08 -12.06 16 13 N -0.71 -13.94 5.42 -61.47 -0.33 -14.27 16 14 C 0.25 6.36 5.43 -5.19 -0.03 6.33 16 15 C -0.54 -14.32 9.28 -34.44 -0.32 -14.64 16 16 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 19 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H 0.05 0.62 5.61 -51.93 -0.29 0.33 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.47 5.83 -51.93 -0.30 1.16 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.95 6.20 -51.93 -0.32 0.63 16 31 H 0.08 0.85 7.44 -51.93 -0.39 0.46 16 32 H 0.39 6.47 7.67 -40.82 -0.31 6.16 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.83 285.41 -6.32 -38.15 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.95 Total: 2.99 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.24 Total: -2.91 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.40 Total: -39.18 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.75 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.83 -6.32 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.966 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds