Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53236 * 109.47938 * 120.02866 * 2 1 3 5 5 C 1.51265 * 108.53501 * 65.37990 * 4 2 1 6 6 O 1.20765 * 120.83462 * 231.34581 * 5 4 2 7 7 C 1.51269 * 118.31229 * 51.32662 * 5 4 2 8 8 C 1.53225 * 108.53508 * 308.65892 * 7 5 4 9 9 C 1.52953 * 109.48258 * 239.96982 * 2 1 3 10 10 H 1.09007 * 109.41690 * 183.57211 * 9 2 1 11 11 C 1.50704 * 109.41678 * 63.71671 * 9 2 1 12 12 O 1.21282 * 119.99140 * 359.97438 * 11 9 2 13 13 N 1.34767 * 120.00669 * 179.97438 * 11 9 2 14 14 C 1.46499 * 120.00209 * 179.97438 * 13 11 9 15 15 C 1.50709 * 109.46888 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99335 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00475 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99521 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46915 * 89.99935 * 19 17 15 21 21 H 1.48497 * 109.47110 * 209.99921 * 19 17 15 22 22 H 1.48496 * 109.46846 * 330.00141 * 19 17 15 23 23 H 1.09002 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47062 * 300.00305 * 1 2 3 25 25 H 1.08997 * 109.46656 * 60.00258 * 1 2 3 26 26 H 1.08999 * 109.62424 * 185.08335 * 4 2 1 27 27 H 1.08999 * 109.62149 * 305.64928 * 4 2 1 28 28 H 1.09008 * 109.62116 * 188.94429 * 7 5 4 29 29 H 1.08990 * 109.78337 * 68.47155 * 7 5 4 30 30 H 1.09004 * 109.48416 * 294.65094 * 8 7 5 31 31 H 1.08995 * 109.49400 * 174.61607 * 8 7 5 32 32 H 0.97002 * 119.99715 * 359.97438 * 13 11 9 33 33 H 1.08998 * 109.46696 * 299.99324 * 14 13 11 34 34 H 1.08998 * 109.47552 * 59.99870 * 14 13 11 35 35 H 0.97003 * 120.00199 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0410 -0.7230 1.2507 5 6 1.6381 -2.1783 1.1632 6 8 1.0648 -2.7180 2.0790 7 6 1.9711 -2.9402 -0.1004 8 6 1.4623 -2.1368 -1.3019 9 6 2.0402 -0.7216 -1.2484 10 1 3.1283 -0.7768 -1.2158 11 6 1.6139 0.0403 -2.4768 12 8 0.9659 1.0592 -2.3637 13 7 1.9528 -0.4105 -3.7008 14 6 1.5379 0.3299 -4.8949 15 6 2.0400 -0.3800 -6.1258 16 1 2.6114 -1.2913 -6.0283 17 6 1.7708 0.1345 -7.3763 18 7 1.0755 1.2444 -7.4950 19 14 2.3938 -0.7450 -8.9021 20 1 1.3757 -1.7249 -9.3589 21 1 2.6436 0.2473 -9.9782 22 1 3.6571 -1.4567 -8.5819 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 3.1272 -0.6462 1.2998 27 1 1.5989 -0.2732 2.1398 28 1 1.4840 -3.9152 -0.0791 29 1 3.0502 -3.0718 -0.1783 30 1 0.3739 -2.0864 -1.2710 31 1 1.7776 -2.6236 -2.2248 32 1 2.4714 -1.2253 -3.7911 33 1 0.4499 0.3868 -4.9272 34 1 1.9536 1.3369 -4.8608 35 1 0.8857 1.6062 -8.3748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344017916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = -123.426041 kcal Electronic energy + Delta-G solvation = -17272.081264 eV Core-core repulsion = 14461.100667 eV Total energy + Delta-G solvation = -2810.980596 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65185 -40.16040 -37.53462 -36.11011 -34.40502 -32.93143 -30.74083 -29.15393 -27.97485 -24.81650 -24.01139 -22.56107 -21.14396 -19.54142 -18.78704 -17.68840 -17.18455 -16.84011 -16.38861 -16.21651 -15.89676 -15.55984 -15.22952 -14.68983 -14.62308 -14.12212 -13.98503 -13.54958 -13.31462 -12.91790 -12.83219 -12.72357 -12.58686 -12.55701 -12.20811 -11.99853 -11.76132 -11.46979 -11.42760 -10.77785 -10.48588 -10.34745 -9.74635 -8.27181 -6.43336 0.98479 1.45054 1.46836 1.57989 1.82748 2.34289 2.62411 3.08251 3.19097 3.54645 3.71184 3.84954 4.00266 4.22971 4.29707 4.30310 4.42892 4.55927 4.73078 4.79378 4.85388 4.92372 5.08161 5.13465 5.16499 5.20039 5.28283 5.37889 5.42705 5.55055 5.75282 5.88588 6.53110 6.68722 6.97693 7.26629 7.57160 8.84904 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045624 B = 0.005074 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.566966 B = 5516.732161 C = 5923.498100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.060 4.060 3 H 0.083 0.917 4 C -0.157 4.157 5 C 0.366 3.634 6 O -0.503 6.503 7 C -0.158 4.158 8 C -0.106 4.106 9 C -0.097 4.097 10 H 0.137 0.863 11 C 0.499 3.501 12 O -0.594 6.594 13 N -0.706 5.706 14 C 0.266 3.734 15 C -0.553 4.553 16 H 0.085 0.915 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.982 3.018 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.254 1.254 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.134 0.866 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.408 0.592 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -8.817 13.609 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.079 4.079 3 H 0.101 0.899 4 C -0.195 4.195 5 C 0.245 3.755 6 O -0.380 6.380 7 C -0.196 4.196 8 C -0.144 4.144 9 C -0.118 4.118 10 H 0.155 0.845 11 C 0.286 3.714 12 O -0.476 6.476 13 N -0.356 5.356 14 C 0.143 3.857 15 C -0.591 4.591 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.177 1.177 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.244 0.756 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.436 -8.259 14.017 17.153 hybrid contribution -0.109 0.017 -1.149 1.155 sum 5.327 -8.242 12.867 16.183 Atomic orbital electron populations 1.22063 0.96087 1.01185 1.02337 1.20787 0.95642 0.99776 0.91698 0.89859 1.22398 1.05257 0.92922 0.98910 1.25334 0.72332 0.91009 0.86858 1.90401 1.33492 1.72618 1.41446 1.22300 1.06030 0.99392 0.91838 1.21558 1.01000 0.92461 0.99398 1.21465 1.04247 0.95292 0.90787 0.84502 1.21368 0.79110 0.85214 0.85679 1.90615 1.41869 1.27779 1.87346 1.46202 1.55055 1.28606 1.05701 1.18510 0.93214 0.91213 0.82776 1.21637 1.35835 1.10814 0.90826 0.89667 1.26040 0.94831 0.95547 1.03154 1.70136 1.39832 1.21916 1.25230 0.85194 0.79198 0.77854 0.77200 1.19778 1.21209 1.17721 0.93191 0.92126 0.93009 0.84846 0.89105 0.88691 0.84506 0.92267 0.88519 0.75567 0.99738 0.99513 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 8.31 71.98 0.60 -3.77 16 2 C -0.06 -1.35 2.33 -10.73 -0.02 -1.38 16 3 H 0.08 2.03 8.00 -2.39 -0.02 2.02 16 4 C -0.16 -2.59 5.65 30.11 0.17 -2.42 16 5 C 0.37 7.16 5.75 29.46 0.17 7.33 16 6 O -0.50 -13.78 17.89 -1.46 -0.03 -13.81 16 7 C -0.16 -2.28 6.17 30.10 0.19 -2.09 16 8 C -0.11 -2.02 4.88 30.65 0.15 -1.87 16 9 C -0.10 -2.18 2.20 -11.57 -0.03 -2.21 16 10 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 11 C 0.50 18.08 6.87 87.66 0.60 18.68 16 12 O -0.59 -27.37 13.88 -3.04 -0.04 -27.41 16 13 N -0.71 -27.56 5.42 -466.79 -2.53 -30.09 16 14 C 0.27 14.10 5.43 85.64 0.46 14.56 16 15 C -0.55 -29.11 9.28 25.60 0.24 -28.87 16 16 H 0.09 4.00 7.60 -2.91 -0.02 3.97 16 17 C 0.00 0.20 5.46 84.66 0.46 0.67 16 18 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 19 Si 0.98 41.33 29.54 68.60 2.03 43.36 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 23 H 0.05 1.31 5.61 -2.39 -0.01 1.29 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.81 5.83 -2.39 -0.01 1.79 16 26 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.14 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.37 6.20 -2.38 -0.01 1.35 16 31 H 0.10 1.62 7.44 -2.39 -0.02 1.60 16 32 H 0.41 12.73 7.67 -92.71 -0.71 12.02 16 33 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -73.27 285.41 3.09 -70.18 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.38 Total: 14.40 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 2.99 Total: -1.36 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.24 Total: -85.36 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.07 Total: -41.22 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -73.27 3.09 -70.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.248 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds