Wall clock time and date at job start Sun Mar 29 2020 22:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47489 * 2 1 4 4 C 1.50699 * 109.47479 * 239.99858 * 2 1 3 5 5 H 1.07993 * 120.00546 * 240.00397 * 4 2 1 6 6 C 1.37883 * 119.99551 * 60.00178 * 4 2 1 7 7 N 1.31511 * 120.00193 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99668 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46927 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46780 * 299.99629 * 8 6 4 11 11 H 1.48499 * 109.46918 * 59.99827 * 8 6 4 12 12 C 1.50701 * 109.47010 * 120.00015 * 2 1 3 13 13 O 1.21279 * 120.00158 * 90.93913 * 12 2 1 14 14 N 1.34773 * 120.00040 * 270.93686 * 12 2 1 15 15 C 1.48205 * 127.77122 * 184.51896 * 14 12 2 16 16 C 1.54919 * 104.49804 * 140.81061 * 15 14 12 17 17 H 1.08991 * 110.56240 * 265.18674 * 16 15 14 18 18 O 1.42904 * 110.37304 * 142.79502 * 16 15 14 19 19 C 1.53630 * 104.61119 * 24.04128 * 16 15 14 20 20 C 1.52270 * 121.50368 * 143.49655 * 19 16 15 21 21 C 1.52283 * 121.48104 * 215.77227 * 19 16 15 22 22 C 1.48324 * 127.76886 * 4.83700 * 14 12 2 23 23 H 1.09007 * 109.47430 * 53.99166 * 1 2 3 24 24 H 1.08994 * 109.47446 * 173.99110 * 1 2 3 25 25 H 1.09003 * 109.47486 * 293.99592 * 1 2 3 26 26 H 0.96999 * 120.00200 * 180.02562 * 7 6 4 27 27 H 1.08999 * 110.40213 * 259.65443 * 15 14 12 28 28 H 1.09002 * 110.39650 * 22.06094 * 15 14 12 29 29 H 0.96694 * 113.99847 * 64.83907 * 18 16 15 30 30 H 1.08996 * 117.51603 * 218.29758 * 20 19 16 31 31 H 1.09004 * 117.51368 * 3.42622 * 20 19 16 32 32 H 1.09000 * 117.51247 * 356.53565 * 21 19 16 33 33 H 1.09000 * 117.51775 * 141.61917 * 21 19 16 34 34 H 1.08997 * 110.44362 * 337.61166 * 22 14 12 35 35 H 1.09005 * 110.44373 * 100.01956 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -0.4205 -5.2204 10 1 3.8064 -1.1208 -4.0080 11 1 1.8259 -2.5202 -4.0077 12 6 2.0322 -0.7104 1.2305 13 8 2.2506 -1.9029 1.1956 14 7 2.2388 -0.0206 2.3697 15 6 2.8111 -0.5201 3.6423 16 6 3.7070 0.6390 4.1460 17 1 4.7397 0.4894 3.8311 18 8 3.6315 0.7437 5.5692 19 6 3.1222 1.8964 3.4848 20 6 3.0771 3.2317 4.2152 21 6 4.0152 3.0390 3.0200 22 6 1.9387 1.4077 2.6340 23 1 -0.3634 0.6042 -0.8313 24 1 -0.3634 -1.0219 -0.1076 25 1 -0.3634 0.4179 0.9389 26 1 0.7082 1.1609 -3.4844 27 1 2.0176 -0.7291 4.3597 28 1 3.4092 -1.4140 3.4649 29 1 3.9869 -0.0228 6.0394 30 1 2.1962 3.8565 4.0682 31 1 3.5277 3.2789 5.2066 32 1 5.0827 2.9593 3.2255 33 1 3.7517 3.5365 2.0867 34 1 1.8861 1.9651 1.6988 35 1 1.0043 1.5044 3.1870 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347753595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:45 Heat of formation + Delta-G solvation = -55.156348 kcal Electronic energy + Delta-G solvation = -17600.587096 eV Core-core repulsion = 14792.566895 eV Total energy + Delta-G solvation = -2808.020200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90494 -37.96915 -35.80908 -34.45793 -33.73269 -30.64435 -28.46160 -26.90958 -25.18507 -23.71003 -22.40567 -21.64507 -19.15327 -18.63827 -17.36293 -16.38081 -16.10840 -15.23634 -15.01843 -14.66202 -14.47908 -14.02309 -13.55070 -12.82260 -12.65023 -12.63306 -12.41368 -11.69730 -11.45834 -11.45165 -10.98962 -10.89905 -10.72091 -10.68884 -10.52357 -10.25870 -10.18307 -10.01306 -9.74504 -9.01846 -8.63261 -8.34710 -8.16639 -6.05393 -4.08724 3.34604 3.36762 3.37554 3.45353 3.64280 3.80689 4.25625 4.45085 4.49422 4.65372 4.95431 5.03586 5.27075 5.28031 5.46611 5.65623 5.72436 5.80641 5.87492 5.94729 6.00064 6.09229 6.12978 6.20560 6.63697 6.77455 6.87201 6.98654 7.46345 7.53540 7.74716 7.97382 8.12360 8.38184 8.95733 9.17360 9.55846 11.02458 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.006528 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.570859 B = 4288.059783 C = 4557.156613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.038 3.962 3 H 0.046 0.954 4 C -0.503 4.503 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.544 3.456 13 O -0.547 6.547 14 N -0.631 5.631 15 C 0.075 3.925 16 C 0.125 3.875 17 H 0.068 0.932 18 O -0.559 6.559 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.160 4.160 22 C 0.143 3.857 23 H 0.091 0.909 24 H 0.036 0.964 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.377 0.623 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 4.915 13.129 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 H 0.064 0.936 4 C -0.541 4.541 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.337 3.663 13 O -0.422 6.422 14 N -0.368 5.368 15 C -0.049 4.049 16 C 0.066 3.934 17 H 0.086 0.914 18 O -0.363 6.363 19 C -0.146 4.146 20 C -0.183 4.183 21 C -0.196 4.196 22 C 0.019 3.981 23 H 0.110 0.890 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.224 0.776 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.585 4.859 12.676 14.040 hybrid contribution 0.563 -0.981 -0.617 1.289 sum 4.147 3.878 12.058 13.328 Atomic orbital electron populations 1.21682 0.96061 1.01090 0.99707 1.18843 0.94287 0.96545 0.88627 0.93610 1.21008 1.31506 1.12520 0.89087 0.91429 1.24925 0.95017 0.95017 0.99027 1.69868 1.36806 1.22971 1.23729 0.86502 0.79198 0.79841 0.81599 1.21255 1.20210 1.20098 1.21862 0.74763 0.87136 0.82504 1.90541 1.52089 1.15794 1.83799 1.49228 1.64887 1.11041 1.11655 1.22958 0.97198 0.97352 0.87436 1.22148 0.97691 0.93372 0.80233 0.91433 1.86512 1.86201 1.45997 1.17627 1.21714 1.00591 0.89805 1.02444 1.22712 1.01803 0.96784 0.96989 1.22984 0.97015 1.00421 0.99223 1.21683 0.94839 0.82472 0.99112 0.89041 0.94477 0.97061 0.92817 0.91163 0.90182 0.77560 0.88546 0.88126 0.88789 0.87909 0.89118 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.86 37.15 0.33 -2.75 16 2 C 0.04 0.97 2.20 -92.93 -0.20 0.77 16 3 H 0.05 1.18 6.67 -51.93 -0.35 0.83 16 4 C -0.50 -14.43 8.32 -34.44 -0.29 -14.72 16 5 H 0.07 2.03 7.12 -52.49 -0.37 1.66 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.11 11.39 55.43 0.63 -24.48 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.54 13.08 6.97 -10.99 -0.08 13.01 16 13 O -0.55 -14.83 16.22 5.56 0.09 -14.74 16 14 N -0.63 -12.08 3.32 -169.18 -0.56 -12.64 16 15 C 0.07 1.16 6.80 -2.09 -0.01 1.15 16 16 C 0.13 1.64 4.30 -25.39 -0.11 1.53 16 17 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 18 O -0.56 -6.26 12.66 -35.23 -0.45 -6.70 16 19 C -0.14 -1.96 2.42 -154.54 -0.37 -2.34 16 20 C -0.15 -1.65 9.90 -27.03 -0.27 -1.92 16 21 C -0.16 -1.92 10.27 -27.02 -0.28 -2.20 16 22 C 0.14 2.26 6.71 -2.66 -0.02 2.25 16 23 H 0.09 2.35 6.25 -51.93 -0.32 2.02 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 28 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 29 H 0.38 2.59 9.12 45.56 0.42 3.00 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.12 7.81 -51.93 -0.41 0.71 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.51 6.54 -51.93 -0.34 1.17 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 291.33 15.07 4.39 4.39 Total: -1.00 -32.38 291.33 -6.61 -38.99 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.30 Total: 2.00 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.39 Total: -3.62 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.07 Total: -37.12 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.36 Total: -21.45 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.38 -6.61 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347753595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.161 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds