Wall clock time and date at job start Sun Mar 29 2020 22:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47489 * 2 1 4 4 C 1.50699 * 109.47479 * 239.99858 * 2 1 3 5 5 H 1.07993 * 120.00546 * 240.00397 * 4 2 1 6 6 C 1.37883 * 119.99551 * 60.00178 * 4 2 1 7 7 N 1.31511 * 120.00193 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99668 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46927 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46780 * 299.99629 * 8 6 4 11 11 H 1.48499 * 109.46918 * 59.99827 * 8 6 4 12 12 C 1.50701 * 109.47010 * 120.00015 * 2 1 3 13 13 O 1.21279 * 120.00158 * 90.93913 * 12 2 1 14 14 N 1.34773 * 120.00040 * 270.93686 * 12 2 1 15 15 C 1.48205 * 127.77122 * 184.51896 * 14 12 2 16 16 C 1.54919 * 104.49804 * 140.81061 * 15 14 12 17 17 H 1.08991 * 110.56240 * 265.18674 * 16 15 14 18 18 O 1.42904 * 110.37304 * 142.79502 * 16 15 14 19 19 C 1.53630 * 104.61119 * 24.04128 * 16 15 14 20 20 C 1.52270 * 121.50368 * 143.49655 * 19 16 15 21 21 C 1.52283 * 121.48104 * 215.77227 * 19 16 15 22 22 C 1.48324 * 127.76886 * 4.83700 * 14 12 2 23 23 H 1.09007 * 109.47430 * 53.99166 * 1 2 3 24 24 H 1.08994 * 109.47446 * 173.99110 * 1 2 3 25 25 H 1.09003 * 109.47486 * 293.99592 * 1 2 3 26 26 H 0.96999 * 120.00200 * 180.02562 * 7 6 4 27 27 H 1.08999 * 110.40213 * 259.65443 * 15 14 12 28 28 H 1.09002 * 110.39650 * 22.06094 * 15 14 12 29 29 H 0.96694 * 113.99847 * 64.83907 * 18 16 15 30 30 H 1.08996 * 117.51603 * 218.29758 * 20 19 16 31 31 H 1.09004 * 117.51368 * 3.42622 * 20 19 16 32 32 H 1.09000 * 117.51247 * 356.53565 * 21 19 16 33 33 H 1.09000 * 117.51775 * 141.61917 * 21 19 16 34 34 H 1.08997 * 110.44362 * 337.61166 * 22 14 12 35 35 H 1.09005 * 110.44373 * 100.01956 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -0.4205 -5.2204 10 1 3.8064 -1.1208 -4.0080 11 1 1.8259 -2.5202 -4.0077 12 6 2.0322 -0.7104 1.2305 13 8 2.2506 -1.9029 1.1956 14 7 2.2388 -0.0206 2.3697 15 6 2.8111 -0.5201 3.6423 16 6 3.7070 0.6390 4.1460 17 1 4.7397 0.4894 3.8311 18 8 3.6315 0.7437 5.5692 19 6 3.1222 1.8964 3.4848 20 6 3.0771 3.2317 4.2152 21 6 4.0152 3.0390 3.0200 22 6 1.9387 1.4077 2.6340 23 1 -0.3634 0.6042 -0.8313 24 1 -0.3634 -1.0219 -0.1076 25 1 -0.3634 0.4179 0.9389 26 1 0.7082 1.1609 -3.4844 27 1 2.0176 -0.7291 4.3597 28 1 3.4092 -1.4140 3.4649 29 1 3.9869 -0.0228 6.0394 30 1 2.1962 3.8565 4.0682 31 1 3.5277 3.2789 5.2066 32 1 5.0827 2.9593 3.2255 33 1 3.7517 3.5365 2.0867 34 1 1.8861 1.9651 1.6988 35 1 1.0043 1.5044 3.1870 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347753595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:45 Heat of formation + Delta-G solvation = -78.216839 kcal Electronic energy + Delta-G solvation = -17601.587074 eV Core-core repulsion = 14792.566895 eV Total energy + Delta-G solvation = -2809.020178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25637 -39.54614 -36.74697 -35.86084 -35.79521 -32.64923 -29.82088 -28.21178 -27.30353 -25.20039 -23.36854 -23.25682 -20.34568 -20.22448 -18.43594 -18.28247 -17.89802 -16.86380 -16.40715 -16.05097 -15.80027 -15.48723 -15.01330 -14.59939 -14.41967 -13.93148 -13.60012 -13.35406 -13.10663 -12.94369 -12.69206 -12.65599 -12.33133 -12.28636 -12.08118 -11.96946 -11.51469 -11.16343 -11.10387 -10.79714 -10.61934 -10.33773 -9.71101 -8.18740 -6.29881 1.39832 1.42024 1.49968 1.80420 1.97826 2.42926 2.76520 3.10820 3.29888 3.43290 3.49730 3.97180 4.00420 4.11295 4.18648 4.41206 4.53794 4.68736 4.73012 4.76034 4.81542 4.83842 4.88285 4.97654 5.00738 5.09740 5.29920 5.32582 5.45093 5.67319 5.86751 6.13950 6.58447 6.75320 6.83311 7.31836 7.41033 8.87623 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.006528 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.570859 B = 4288.059783 C = 4557.156613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.036 3.964 3 H 0.041 0.959 4 C -0.534 4.534 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.542 3.458 13 O -0.590 6.590 14 N -0.630 5.630 15 C 0.071 3.929 16 C 0.141 3.859 17 H 0.073 0.927 18 O -0.558 6.558 19 C -0.165 4.165 20 C -0.123 4.123 21 C -0.160 4.160 22 C 0.139 3.861 23 H 0.075 0.925 24 H 0.020 0.980 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.398 0.602 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 6.051 14.266 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.015 3.985 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.335 3.665 13 O -0.470 6.470 14 N -0.365 5.365 15 C -0.052 4.052 16 C 0.081 3.919 17 H 0.091 0.909 18 O -0.366 6.366 19 C -0.166 4.166 20 C -0.161 4.161 21 C -0.197 4.197 22 C 0.016 3.984 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.248 0.752 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.008 6.040 13.869 15.649 hybrid contribution 0.424 -1.285 -0.875 1.611 sum 4.432 4.755 12.994 14.529 Atomic orbital electron populations 1.21499 0.95297 0.99850 1.00607 1.18741 0.94942 0.95934 0.88896 0.94113 1.21151 1.32383 1.12526 0.91153 0.93898 1.25588 0.94994 0.95661 1.01352 1.69937 1.36746 1.23393 1.24611 0.85631 0.78818 0.78648 0.78686 1.19612 1.19803 1.20368 1.21409 0.74981 0.86563 0.83584 1.90504 1.54322 1.17372 1.84835 1.49056 1.63410 1.12519 1.11521 1.23219 0.97935 0.98239 0.85817 1.21861 0.97043 0.91728 0.81260 0.90935 1.86479 1.86432 1.47329 1.16348 1.21704 1.00452 0.90948 1.03501 1.22788 1.01786 0.94533 0.96947 1.23073 0.97673 0.99279 0.99684 1.21879 0.96889 0.80305 0.99311 0.90588 0.96115 0.94066 0.92353 0.89821 0.91151 0.75205 0.87333 0.87245 0.87748 0.88211 0.90341 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 8.86 71.98 0.64 -4.96 16 2 C 0.04 1.88 2.20 -12.29 -0.03 1.85 16 3 H 0.04 2.14 6.67 -2.38 -0.02 2.12 16 4 C -0.53 -31.47 8.32 25.60 0.21 -31.26 16 5 H 0.04 2.69 7.12 -2.91 -0.02 2.67 16 6 C 0.02 1.35 5.30 84.66 0.45 1.79 16 7 N -0.91 -51.03 11.39 21.45 0.24 -50.79 16 8 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.54 26.58 6.97 87.66 0.61 27.19 16 13 O -0.59 -33.08 16.22 -3.03 -0.05 -33.13 16 14 N -0.63 -23.89 3.32 -807.57 -2.68 -26.57 16 15 C 0.07 2.12 6.80 86.71 0.59 2.71 16 16 C 0.14 3.35 4.30 31.46 0.14 3.49 16 17 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 18 O -0.56 -10.62 12.66 -148.98 -1.89 -12.51 16 19 C -0.17 -4.10 2.42 -52.20 -0.13 -4.23 16 20 C -0.12 -2.40 9.90 30.40 0.30 -2.10 16 21 C -0.16 -3.48 10.27 30.41 0.31 -3.16 16 22 C 0.14 4.21 6.71 86.28 0.58 4.79 16 23 H 0.08 3.94 6.25 -2.38 -0.01 3.92 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 28 H 0.07 2.23 7.93 -2.39 -0.02 2.22 16 29 H 0.40 4.11 9.12 -74.06 -0.68 3.44 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 1.99 7.81 -2.39 -0.02 1.97 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.57 6.54 -2.39 -0.02 2.55 16 35 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -69.93 291.33 1.74 -68.19 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.41 Total: 11.78 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 3.67 Total: -3.89 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.44 Total: -77.35 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.93 Total: -45.64 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.93 1.74 -68.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347753595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.028 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds