Wall clock time and date at job start Sun Mar 29 2020 22:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46939 * 2 1 4 4 C 1.50699 * 109.47158 * 120.00072 * 2 1 3 5 5 H 1.08001 * 119.99969 * 119.99392 * 4 2 1 6 6 C 1.37879 * 119.99833 * 299.99677 * 4 2 1 7 7 N 1.31509 * 119.99805 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99994 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47186 * 90.00026 * 8 6 4 10 10 H 1.48500 * 109.46703 * 209.99874 * 8 6 4 11 11 H 1.48492 * 109.47119 * 329.99650 * 8 6 4 12 12 C 1.50698 * 109.46560 * 239.99917 * 2 1 3 13 13 O 1.21281 * 119.99671 * 239.99663 * 12 2 1 14 14 N 1.34769 * 120.00428 * 60.00477 * 12 2 1 15 15 C 1.48212 * 127.76779 * 359.96643 * 14 12 2 16 16 C 1.54567 * 104.66995 * 140.84643 * 15 14 12 17 17 H 1.08996 * 110.40542 * 142.56576 * 16 15 14 18 18 O 1.42894 * 110.50468 * 264.93814 * 16 15 14 19 19 C 1.53641 * 104.64755 * 23.77808 * 16 15 14 20 20 C 1.52285 * 121.47584 * 215.94863 * 19 16 15 21 21 C 1.52266 * 121.50377 * 143.67445 * 19 16 15 22 22 C 1.48317 * 127.77270 * 179.97438 * 14 12 2 23 23 H 1.09001 * 109.47036 * 300.00042 * 1 2 3 24 24 H 1.09000 * 109.47318 * 59.99543 * 1 2 3 25 25 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 26 26 H 0.97007 * 120.00274 * 180.02562 * 7 6 4 27 27 H 1.09006 * 110.39118 * 22.05344 * 15 14 12 28 28 H 1.08992 * 110.40158 * 259.65076 * 15 14 12 29 29 H 0.96705 * 114.00180 * 295.28429 * 18 16 15 30 30 H 1.08998 * 117.51688 * 356.53487 * 20 19 16 31 31 H 1.08996 * 117.51554 * 141.66295 * 20 19 16 32 32 H 1.08999 * 117.51364 * 218.29322 * 21 19 16 33 33 H 1.08999 * 117.51504 * 3.36884 * 21 19 16 34 34 H 1.08997 * 110.44998 * 100.14438 * 22 14 12 35 35 H 1.09002 * 110.44398 * 337.61462 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1765 1.4921 12 6 2.0322 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4545 15 6 0.8726 0.9286 -2.7888 16 6 1.5743 1.5720 -4.0065 17 1 0.8366 1.9583 -4.7098 18 8 2.4528 2.6167 -3.5837 19 6 2.3736 0.4256 -4.6448 20 6 3.7371 0.6641 -5.2796 21 6 2.5313 0.3100 -6.1549 22 6 2.1024 -0.8089 -3.7702 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.9035 -0.5278 4.4376 27 1 0.8485 1.6265 -1.9518 28 1 -0.1375 0.6165 -3.0535 29 1 2.0023 3.3674 -3.1730 30 1 4.1026 1.6903 -5.3170 31 1 4.4993 -0.1021 -5.1383 32 1 2.5006 -0.6892 -6.5893 33 1 2.1031 1.1029 -6.7681 34 1 1.2911 -1.4027 -4.1912 35 1 3.0053 -1.4116 -3.6719 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347753596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:47 Heat of formation + Delta-G solvation = -42.310266 kcal Electronic energy + Delta-G solvation = -17768.498320 eV Core-core repulsion = 14961.035168 eV Total energy + Delta-G solvation = -2807.463153 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06724 -38.05992 -35.83120 -34.59754 -33.80095 -31.25729 -28.74123 -27.19567 -25.17513 -23.61922 -22.54416 -21.95264 -19.29218 -18.72474 -17.19271 -16.80918 -15.94469 -15.86558 -15.26775 -14.74444 -14.33704 -14.06817 -13.84927 -13.24253 -12.86211 -12.69239 -12.34636 -11.96139 -11.82579 -11.56400 -11.52547 -11.22744 -10.97021 -10.69098 -10.57222 -10.28238 -10.11783 -9.90163 -9.61831 -9.08983 -8.70567 -8.57208 -8.23057 -6.04194 -4.04256 3.22431 3.29099 3.34693 3.36211 3.51027 3.64694 4.20095 4.37911 4.41674 4.54138 4.70470 4.96821 5.14222 5.24964 5.32333 5.50999 5.54486 5.65526 5.69302 5.80178 5.82510 5.91513 6.03794 6.09511 6.11622 6.28679 6.39608 6.58062 6.80541 7.17159 7.55757 7.58890 8.11739 8.55126 9.07239 9.15889 9.54498 11.08869 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037352 B = 0.007125 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.437731 B = 3928.667920 C = 4276.242511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.002 3.998 3 H 0.051 0.949 4 C -0.506 4.506 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.268 1.268 12 C 0.552 3.448 13 O -0.529 6.529 14 N -0.629 5.629 15 C 0.075 3.925 16 C 0.124 3.876 17 H 0.070 0.930 18 O -0.555 6.555 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.160 4.160 22 C 0.140 3.860 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.264 0.736 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.378 0.622 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 7.602 -18.240 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 H 0.069 0.931 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.193 1.193 12 C 0.343 3.657 13 O -0.403 6.403 14 N -0.366 5.366 15 C -0.049 4.049 16 C 0.064 3.936 17 H 0.088 0.912 18 O -0.360 6.360 19 C -0.145 4.145 20 C -0.182 4.182 21 C -0.197 4.197 22 C 0.017 3.983 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.225 0.775 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.708 6.574 -18.047 19.561 hybrid contribution -1.176 1.256 0.462 1.782 sum -4.885 7.830 -17.585 19.860 Atomic orbital electron populations 1.22231 0.97405 1.01631 0.99343 1.19250 0.93160 0.97444 0.92071 0.93113 1.20949 1.32089 1.14124 0.87205 0.88881 1.24975 0.95856 0.96571 0.95722 1.69881 1.45445 1.40191 0.97847 0.86900 0.80673 0.83838 0.77052 1.20524 1.22246 1.19347 1.21049 0.78487 0.83929 0.82201 1.90591 1.37644 1.26617 1.85412 1.49132 1.52721 1.29782 1.04959 1.23137 0.94414 0.89503 0.97875 1.22142 0.90486 0.86959 0.94036 0.91182 1.86567 1.36951 1.30918 1.81612 1.21758 1.01973 0.96343 0.94451 1.22768 0.90582 1.03208 1.01668 1.22904 1.02813 1.03004 0.90970 1.21535 1.00806 0.93296 0.82654 0.93309 0.94499 0.92397 0.92555 0.89250 0.90722 0.77465 0.88028 0.88633 0.88288 0.88622 0.91278 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.42 37.16 0.31 -2.80 16 2 C 0.00 0.05 1.56 -92.92 -0.15 -0.09 16 3 H 0.05 1.21 7.01 -51.93 -0.36 0.85 16 4 C -0.51 -15.00 8.96 -34.44 -0.31 -15.31 16 5 H 0.09 3.15 7.00 -52.49 -0.37 2.78 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 8 Si 0.89 21.50 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 12 C 0.55 12.92 7.26 -10.99 -0.08 12.84 16 13 O -0.53 -14.47 15.73 5.56 0.09 -14.39 16 14 N -0.63 -11.33 3.31 -169.43 -0.56 -11.90 16 15 C 0.08 1.01 5.01 -2.28 -0.01 1.00 16 16 C 0.12 1.42 4.29 -25.58 -0.11 1.31 16 17 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 18 O -0.55 -6.81 12.66 -35.23 -0.45 -7.26 16 19 C -0.14 -1.78 2.42 -154.55 -0.37 -2.15 16 20 C -0.15 -1.69 9.88 -27.02 -0.27 -1.96 16 21 C -0.16 -1.50 10.29 -27.03 -0.28 -1.78 16 22 C 0.14 2.10 6.83 -2.68 -0.02 2.09 16 23 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 24 H 0.04 0.61 5.34 -51.93 -0.28 0.34 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 27 H 0.09 1.22 6.53 -51.93 -0.34 0.88 16 28 H 0.07 0.85 7.99 -51.93 -0.42 0.43 16 29 H 0.38 3.02 9.12 45.56 0.42 3.44 16 30 H 0.10 1.21 7.82 -51.93 -0.41 0.80 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.36 7.87 -51.93 -0.41 0.96 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -35.58 280.00 -5.49 -41.08 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.05 Total: 3.04 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.38 Total: -4.89 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.21 Total: -39.16 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.36 Total: -21.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.58 -5.49 -41.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347753596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.233 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds