Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46939 * 2 1 4 4 C 1.50699 * 109.47158 * 120.00072 * 2 1 3 5 5 H 1.08001 * 119.99969 * 119.99392 * 4 2 1 6 6 C 1.37879 * 119.99833 * 299.99677 * 4 2 1 7 7 N 1.31509 * 119.99805 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99994 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47186 * 90.00026 * 8 6 4 10 10 H 1.48500 * 109.46703 * 209.99874 * 8 6 4 11 11 H 1.48492 * 109.47119 * 329.99650 * 8 6 4 12 12 C 1.50698 * 109.46560 * 239.99917 * 2 1 3 13 13 O 1.21281 * 119.99671 * 239.99663 * 12 2 1 14 14 N 1.34769 * 120.00428 * 60.00477 * 12 2 1 15 15 C 1.48212 * 127.76779 * 359.96643 * 14 12 2 16 16 C 1.54567 * 104.66995 * 140.84643 * 15 14 12 17 17 H 1.08996 * 110.40542 * 142.56576 * 16 15 14 18 18 O 1.42894 * 110.50468 * 264.93814 * 16 15 14 19 19 C 1.53641 * 104.64755 * 23.77808 * 16 15 14 20 20 C 1.52285 * 121.47584 * 215.94863 * 19 16 15 21 21 C 1.52266 * 121.50377 * 143.67445 * 19 16 15 22 22 C 1.48317 * 127.77270 * 179.97438 * 14 12 2 23 23 H 1.09001 * 109.47036 * 300.00042 * 1 2 3 24 24 H 1.09000 * 109.47318 * 59.99543 * 1 2 3 25 25 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 26 26 H 0.97007 * 120.00274 * 180.02562 * 7 6 4 27 27 H 1.09006 * 110.39118 * 22.05344 * 15 14 12 28 28 H 1.08992 * 110.40158 * 259.65076 * 15 14 12 29 29 H 0.96705 * 114.00180 * 295.28429 * 18 16 15 30 30 H 1.08998 * 117.51688 * 356.53487 * 20 19 16 31 31 H 1.08996 * 117.51554 * 141.66295 * 20 19 16 32 32 H 1.08999 * 117.51364 * 218.29322 * 21 19 16 33 33 H 1.08999 * 117.51504 * 3.36884 * 21 19 16 34 34 H 1.08997 * 110.44998 * 100.14438 * 22 14 12 35 35 H 1.09002 * 110.44398 * 337.61462 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1765 1.4921 12 6 2.0322 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4545 15 6 0.8726 0.9286 -2.7888 16 6 1.5743 1.5720 -4.0065 17 1 0.8366 1.9583 -4.7098 18 8 2.4528 2.6167 -3.5837 19 6 2.3736 0.4256 -4.6448 20 6 3.7371 0.6641 -5.2796 21 6 2.5313 0.3100 -6.1549 22 6 2.1024 -0.8089 -3.7702 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.9035 -0.5278 4.4376 27 1 0.8485 1.6265 -1.9518 28 1 -0.1375 0.6165 -3.0535 29 1 2.0023 3.3674 -3.1730 30 1 4.1026 1.6903 -5.3170 31 1 4.4993 -0.1021 -5.1383 32 1 2.5006 -0.6892 -6.5893 33 1 2.1031 1.1029 -6.7681 34 1 1.2911 -1.4027 -4.1912 35 1 3.0053 -1.4116 -3.6719 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347753596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = -71.743080 kcal Electronic energy + Delta-G solvation = -17769.774623 eV Core-core repulsion = 14961.035168 eV Total energy + Delta-G solvation = -2808.739455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32011 -39.55283 -36.70739 -36.02810 -35.70763 -33.33373 -29.88563 -28.49248 -27.13828 -25.03712 -23.52275 -23.30997 -20.46440 -20.10499 -18.89921 -18.05380 -17.62757 -17.20615 -16.79720 -16.12553 -15.66238 -15.44214 -15.18457 -14.66753 -14.58369 -14.11882 -13.95283 -13.44600 -13.11046 -12.89371 -12.84424 -12.54068 -12.36981 -12.19592 -12.14526 -11.55463 -11.46984 -11.28453 -10.99827 -10.80452 -10.77843 -10.47566 -9.64159 -8.29738 -6.38595 1.30154 1.38245 1.49730 1.77661 2.00156 2.32578 2.71621 3.03116 3.33279 3.49368 3.61384 3.79613 3.95040 4.13889 4.28017 4.36498 4.47034 4.54929 4.57924 4.68371 4.75627 4.76457 4.80868 4.82377 4.92804 5.02986 5.08909 5.28736 5.33104 5.41602 5.51305 6.24618 6.55411 6.78964 6.95440 7.21949 7.37962 8.88309 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037352 B = 0.007125 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.437731 B = 3928.667920 C = 4276.242511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.003 3.997 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.025 0.975 6 C 0.005 3.995 7 N -0.952 5.952 8 Si 0.963 3.037 9 H -0.256 1.256 10 H -0.297 1.297 11 H -0.230 1.230 12 C 0.543 3.457 13 O -0.592 6.592 14 N -0.627 5.627 15 C 0.061 3.939 16 C 0.132 3.868 17 H 0.115 0.885 18 O -0.578 6.578 19 C -0.162 4.162 20 C -0.165 4.165 21 C -0.121 4.121 22 C 0.134 3.866 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.268 0.732 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.396 0.604 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 10.904 -21.047 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.043 0.957 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.787 3.213 9 H -0.181 1.181 10 H -0.225 1.225 11 H -0.153 1.153 12 C 0.335 3.665 13 O -0.472 6.472 14 N -0.361 5.361 15 C -0.061 4.061 16 C 0.072 3.928 17 H 0.132 0.868 18 O -0.386 6.386 19 C -0.163 4.163 20 C -0.203 4.203 21 C -0.158 4.158 22 C 0.012 3.988 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.247 0.753 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.775 9.924 -20.933 24.137 hybrid contribution -0.122 0.139 1.271 1.285 sum -6.897 10.063 -19.662 23.139 Atomic orbital electron populations 1.22114 0.94124 1.01733 1.01786 1.19136 0.95643 0.96904 0.90198 0.91959 1.21096 1.31946 1.12927 0.90539 0.95681 1.26098 0.97488 1.00951 0.94591 1.70083 1.47510 1.42866 0.98764 0.85658 0.78795 0.78689 0.78162 1.18145 1.22479 1.15301 1.20883 0.78268 0.83407 0.83972 1.90559 1.40596 1.29388 1.86671 1.49000 1.52001 1.30828 1.04258 1.23647 0.95494 0.87796 0.99149 1.22213 0.90620 0.86390 0.93534 0.86785 1.86538 1.38301 1.31839 1.81957 1.21787 1.02796 0.95435 0.96236 1.22783 0.90924 1.02772 1.03778 1.23025 0.99361 1.04492 0.88951 1.21749 1.00396 0.94841 0.81822 0.93300 0.89327 0.93664 0.92272 0.88983 0.87268 0.75337 0.88304 0.89939 0.87066 0.86005 0.88860 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.42 71.98 0.61 -4.87 16 2 C 0.00 0.13 1.56 -12.29 -0.02 0.11 16 3 H 0.06 2.85 7.01 -2.39 -0.02 2.84 16 4 C -0.53 -32.88 8.96 25.60 0.23 -32.65 16 5 H 0.02 1.85 7.00 -2.91 -0.02 1.83 16 6 C 0.01 0.31 5.45 84.66 0.46 0.77 16 7 N -0.95 -62.42 13.96 21.45 0.30 -62.12 16 8 Si 0.96 43.43 24.37 68.60 1.67 45.10 16 9 H -0.26 -10.63 6.87 99.48 0.68 -9.95 16 10 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.23 -8.91 6.53 99.48 0.65 -8.26 16 12 C 0.54 26.04 7.26 87.66 0.64 26.68 16 13 O -0.59 -34.83 15.73 -3.03 -0.05 -34.87 16 14 N -0.63 -21.71 3.31 -808.34 -2.68 -24.39 16 15 C 0.06 1.37 5.01 86.58 0.43 1.80 16 16 C 0.13 2.40 4.29 31.34 0.13 2.54 16 17 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 18 O -0.58 -12.00 12.66 -148.98 -1.89 -13.89 16 19 C -0.16 -3.49 2.42 -52.21 -0.13 -3.62 16 20 C -0.17 -3.58 9.88 30.41 0.30 -3.28 16 21 C -0.12 -1.77 10.29 30.40 0.31 -1.46 16 22 C 0.13 3.87 6.83 86.27 0.59 4.46 16 23 H 0.05 1.91 3.27 -2.39 -0.01 1.90 16 24 H 0.09 2.50 5.34 -2.39 -0.01 2.49 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.27 16.19 8.31 -92.70 -0.77 15.42 16 27 H 0.09 2.03 6.53 -2.38 -0.02 2.02 16 28 H 0.11 1.77 7.99 -2.39 -0.02 1.75 16 29 H 0.40 4.63 9.12 -74.05 -0.68 3.95 16 30 H 0.10 2.18 7.82 -2.39 -0.02 2.17 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.77 7.87 -2.39 -0.02 1.75 16 Total: -1.00 -86.10 280.00 1.26 -84.83 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.35 Total: 14.86 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.56 Total: -9.52 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.38 Total: -86.52 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.93 Total: -48.76 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.67 Total: 45.10 kcal Total: -86.10 1.26 -84.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347753596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.089 kcal (2) G-P(sol) polarization free energy of solvation -86.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds