Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48498 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00130 * 3 2 1 6 6 H 1.48497 * 109.46697 * 60.00105 * 3 2 1 7 7 C 1.37876 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99977 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00178 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99970 * 354.89749 * 11 10 9 13 13 N 1.34784 * 120.00082 * 174.89581 * 11 10 9 14 14 C 1.47151 * 120.67975 * 184.66330 * 13 11 10 15 15 C 1.54325 * 107.81170 * 132.56357 * 14 13 11 16 16 H 1.09004 * 112.56286 * 182.48202 * 15 14 13 17 17 C 1.54544 * 107.96464 * 306.88057 * 15 14 13 18 18 C 1.54247 * 104.94052 * 88.91390 * 17 15 14 19 19 C 1.54544 * 104.93988 * 359.97438 * 18 17 15 20 20 H 1.09001 * 112.71169 * 146.75451 * 19 18 17 21 21 C 1.47152 * 120.68129 * 4.93966 * 13 11 10 22 22 N 1.48725 * 104.32082 * 24.74434 * 19 18 17 23 23 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47091 * 300.00438 * 9 7 2 25 25 H 1.09000 * 109.47476 * 59.99982 * 9 7 2 26 26 H 0.97005 * 119.99925 * 359.97438 * 10 9 7 27 27 H 1.08997 * 109.74468 * 252.26625 * 14 13 11 28 28 H 1.08999 * 109.75114 * 12.99578 * 14 13 11 29 29 H 1.09004 * 110.34899 * 207.78183 * 17 15 14 30 30 H 1.09000 * 110.34692 * 329.94086 * 17 15 14 31 31 H 1.09005 * 110.34762 * 241.13787 * 18 17 15 32 32 H 1.09000 * 110.35178 * 118.86971 * 18 17 15 33 33 H 1.08996 * 109.74521 * 347.00915 * 21 13 11 34 34 H 1.09008 * 109.74230 * 107.72824 * 21 13 11 35 35 H 1.00901 * 111.00055 * 199.83549 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5624 -5.1069 0.0921 13 7 2.6255 -5.9062 -0.1049 14 6 2.1460 -7.2934 -0.2097 15 6 2.9082 -7.9700 -1.3686 16 1 2.5800 -8.9948 -1.5431 17 6 2.7497 -7.0840 -2.6248 18 6 3.9260 -6.0883 -2.5602 19 6 4.6917 -6.4595 -1.2701 20 1 5.7660 -6.2962 -1.3566 21 6 4.0761 -5.6591 -0.1097 22 7 4.3568 -7.8905 -1.0424 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6242 -2.5568 -0.8903 26 1 3.1569 -3.4353 -0.0009 27 1 2.3425 -7.8224 0.7229 28 1 1.0762 -7.2986 -0.4184 29 1 2.8163 -7.6912 -3.5277 30 1 1.7987 -6.5521 -2.5960 31 1 3.5539 -5.0656 -2.4985 32 1 4.5706 -6.2060 -3.4312 33 1 4.2681 -4.5958 -0.2531 34 1 4.5088 -5.9879 0.8352 35 1 4.5266 -8.1534 -0.0831 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350204288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = -14.202962 kcal Electronic energy + Delta-G solvation = -17753.260963 eV Core-core repulsion = 14979.309386 eV Total energy + Delta-G solvation = -2773.951577 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80755 -38.30728 -34.29556 -33.72171 -32.35047 -31.37052 -30.43811 -27.41284 -25.44612 -24.60616 -22.51526 -20.64954 -20.36846 -19.12849 -18.31994 -16.25317 -16.09886 -15.71089 -15.51973 -14.61679 -14.23933 -13.88597 -13.56745 -13.31071 -13.15501 -12.71095 -12.60937 -12.14201 -12.01311 -11.72002 -11.37925 -11.22210 -10.95226 -10.91890 -10.86694 -10.43318 -10.30188 -9.45265 -9.37616 -9.03193 -8.74527 -8.22074 -7.72621 -6.16796 -4.23550 3.09396 3.22957 3.30296 3.33357 3.85695 4.03233 4.29876 4.54763 4.65311 4.74315 4.81908 4.92508 5.06540 5.19403 5.31594 5.44871 5.56774 5.65204 5.75636 5.81170 5.86883 5.99715 6.11427 6.17623 6.59291 6.71894 7.06698 7.14926 7.49021 7.51207 7.55380 7.82913 8.00161 8.73572 8.87446 9.29220 9.45677 10.93512 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.005897 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.810176 B = 4747.140411 C = 5059.987963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.598 6.598 13 N -0.636 5.636 14 C 0.102 3.898 15 C 0.051 3.949 16 H 0.106 0.894 17 C -0.113 4.113 18 C -0.113 4.113 19 C 0.052 3.948 20 H 0.107 0.893 21 C 0.081 3.919 22 N -0.658 5.658 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.385 0.615 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.181 -13.576 -2.618 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.400 3.600 12 O -0.477 6.477 13 N -0.376 5.376 14 C -0.023 4.023 15 C -0.060 4.060 16 H 0.124 0.876 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.059 4.059 20 H 0.125 0.875 21 C -0.045 4.045 22 N -0.287 5.287 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.220 0.780 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.381 -13.842 -3.192 17.023 hybrid contribution 0.457 1.540 0.899 1.841 sum 9.838 -12.301 -2.293 15.917 Atomic orbital electron populations 1.69989 1.06096 1.27179 1.48987 1.24945 0.94908 0.99407 0.94736 0.86361 0.79792 0.82979 0.77768 1.19667 1.20778 1.20783 1.21242 0.93227 0.90422 1.53079 0.91995 1.18989 0.87805 0.81119 0.97575 1.45874 1.10797 1.04403 1.77189 1.16031 0.84725 0.81026 0.78244 1.90863 1.14390 1.83830 1.58608 1.47276 1.04946 1.05862 1.79521 1.22277 1.01213 0.81295 0.97503 1.23346 0.88302 0.99435 0.94923 0.87568 1.22233 0.99135 0.96883 0.96834 1.22242 0.96538 0.99777 0.96573 1.23226 0.99817 0.88034 0.94781 0.87512 1.22453 0.81704 1.01739 0.98562 1.63870 1.16594 1.19407 1.28795 0.92496 0.95720 0.95840 0.78040 0.92330 0.88598 0.91522 0.90979 0.90915 0.91391 0.89535 0.91819 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.19 5.43 -5.20 -0.03 7.17 16 10 N -0.73 -15.90 5.46 -66.41 -0.36 -16.26 16 11 C 0.70 14.76 8.30 -86.91 -0.72 14.04 16 12 O -0.60 -15.17 15.84 5.29 0.08 -15.08 16 13 N -0.64 -9.93 2.24 -177.03 -0.40 -10.33 16 14 C 0.10 1.37 5.71 -2.99 -0.02 1.35 16 15 C 0.05 0.56 4.60 -65.21 -0.30 0.26 16 16 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.11 -1.38 6.17 -25.27 -0.16 -1.53 16 18 C -0.11 -1.36 6.18 -25.27 -0.16 -1.51 16 19 C 0.05 0.55 4.59 -65.46 -0.30 0.25 16 20 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 21 C 0.08 0.98 5.67 -3.26 -0.02 0.96 16 22 N -0.66 -6.76 7.39 -94.35 -0.70 -7.45 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.38 7.29 5.83 -40.82 -0.24 7.05 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.10 1.48 7.15 -51.93 -0.37 1.11 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 31 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.08 5.70 -51.93 -0.30 0.78 16 34 H 0.06 0.68 8.13 -51.92 -0.42 0.26 16 35 H 0.34 3.07 8.34 -39.29 -0.33 2.74 16 LS Contribution 280.17 15.07 4.22 4.22 Total: -1.00 -32.28 280.17 -8.51 -40.78 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.96 Total: 6.20 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.11 Total: 7.56 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.72 Total: -59.53 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.28 -8.51 -40.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350204288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.582 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds