Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48498 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00130 * 3 2 1 6 6 H 1.48497 * 109.46697 * 60.00105 * 3 2 1 7 7 C 1.37876 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99977 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00178 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99970 * 354.89749 * 11 10 9 13 13 N 1.34784 * 120.00082 * 174.89581 * 11 10 9 14 14 C 1.47151 * 120.67975 * 184.66330 * 13 11 10 15 15 C 1.54325 * 107.81170 * 132.56357 * 14 13 11 16 16 H 1.09004 * 112.56286 * 182.48202 * 15 14 13 17 17 C 1.54544 * 107.96464 * 306.88057 * 15 14 13 18 18 C 1.54247 * 104.94052 * 88.91390 * 17 15 14 19 19 C 1.54544 * 104.93988 * 359.97438 * 18 17 15 20 20 H 1.09001 * 112.71169 * 146.75451 * 19 18 17 21 21 C 1.47152 * 120.68129 * 4.93966 * 13 11 10 22 22 N 1.48725 * 104.32082 * 24.74434 * 19 18 17 23 23 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47091 * 300.00438 * 9 7 2 25 25 H 1.09000 * 109.47476 * 59.99982 * 9 7 2 26 26 H 0.97005 * 119.99925 * 359.97438 * 10 9 7 27 27 H 1.08997 * 109.74468 * 252.26625 * 14 13 11 28 28 H 1.08999 * 109.75114 * 12.99578 * 14 13 11 29 29 H 1.09004 * 110.34899 * 207.78183 * 17 15 14 30 30 H 1.09000 * 110.34692 * 329.94086 * 17 15 14 31 31 H 1.09005 * 110.34762 * 241.13787 * 18 17 15 32 32 H 1.09000 * 110.35178 * 118.86971 * 18 17 15 33 33 H 1.08996 * 109.74521 * 347.00915 * 21 13 11 34 34 H 1.09008 * 109.74230 * 107.72824 * 21 13 11 35 35 H 1.00901 * 111.00055 * 199.83549 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5624 -5.1069 0.0921 13 7 2.6255 -5.9062 -0.1049 14 6 2.1460 -7.2934 -0.2097 15 6 2.9082 -7.9700 -1.3686 16 1 2.5800 -8.9948 -1.5431 17 6 2.7497 -7.0840 -2.6248 18 6 3.9260 -6.0883 -2.5602 19 6 4.6917 -6.4595 -1.2701 20 1 5.7660 -6.2962 -1.3566 21 6 4.0761 -5.6591 -0.1097 22 7 4.3568 -7.8905 -1.0424 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6242 -2.5568 -0.8903 26 1 3.1569 -3.4353 -0.0009 27 1 2.3425 -7.8224 0.7229 28 1 1.0762 -7.2986 -0.4184 29 1 2.8163 -7.6912 -3.5277 30 1 1.7987 -6.5521 -2.5960 31 1 3.5539 -5.0656 -2.4985 32 1 4.5706 -6.2060 -3.4312 33 1 4.2681 -4.5958 -0.2531 34 1 4.5088 -5.9879 0.8352 35 1 4.5266 -8.1534 -0.0831 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350204288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = -39.088061 kcal Electronic energy + Delta-G solvation = -17754.340062 eV Core-core repulsion = 14979.309386 eV Total energy + Delta-G solvation = -2775.030676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.01991 -39.82981 -36.26211 -35.16323 -34.23455 -32.48714 -31.37551 -29.38386 -26.79620 -25.71104 -24.46243 -21.93709 -21.41390 -20.54792 -19.78067 -18.13262 -17.36667 -17.27005 -16.80129 -16.33191 -15.82962 -15.06985 -14.93037 -14.77944 -14.47114 -14.11553 -14.02210 -13.65922 -13.57276 -13.00360 -12.87902 -12.76102 -12.45564 -12.20774 -12.19239 -11.85783 -11.47324 -11.38892 -11.24945 -10.83941 -10.29353 -9.81007 -9.14363 -8.30650 -6.47730 1.42134 1.44102 1.56905 1.68969 2.16290 2.36840 3.04402 3.04978 3.22624 3.65931 3.72524 3.88965 3.90027 4.07143 4.31607 4.43590 4.61382 4.65906 4.72043 4.84596 4.88486 5.02002 5.04515 5.15294 5.22574 5.22613 5.43690 5.50835 5.65744 5.70471 5.81690 6.03710 6.37788 6.63776 7.12019 7.22794 7.64120 8.82108 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.005897 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.810176 B = 4747.140411 C = 5059.987963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.694 3.306 12 O -0.649 6.649 13 N -0.624 5.624 14 C 0.097 3.903 15 C 0.064 3.936 16 H 0.131 0.869 17 C -0.117 4.117 18 C -0.117 4.117 19 C 0.063 3.937 20 H 0.137 0.863 21 C 0.073 3.927 22 N -0.648 5.648 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.017 1.017 26 H 0.401 0.599 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.583 -14.175 -2.654 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.163 3.837 10 N -0.378 5.378 11 C 0.395 3.605 12 O -0.532 6.532 13 N -0.362 5.362 14 C -0.028 4.028 15 C -0.047 4.047 16 H 0.149 0.851 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.047 4.047 20 H 0.155 0.845 21 C -0.050 4.050 22 N -0.277 5.277 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.239 0.761 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.870 -14.508 -3.226 19.660 hybrid contribution -0.625 1.624 0.895 1.956 sum 12.245 -12.884 -2.331 17.927 Atomic orbital electron populations 1.70153 1.08342 1.28578 1.49910 1.26086 0.95783 1.03931 0.93751 0.85075 0.79065 0.77105 0.77741 1.17545 1.20352 1.20391 1.21592 0.94215 0.90381 1.52999 0.89920 1.18401 0.88091 0.83454 0.93741 1.45455 1.10789 1.03851 1.77752 1.16221 0.84719 0.81670 0.77889 1.90820 1.17028 1.84654 1.60702 1.47255 1.06013 1.05371 1.77576 1.22532 1.00163 0.80191 0.99875 1.23327 0.88584 0.99953 0.92845 0.85109 1.22245 0.97629 0.97264 0.98428 1.22265 0.96816 0.98109 0.98347 1.23272 1.00943 0.87759 0.92769 0.84534 1.22807 0.79146 1.02210 1.00881 1.63889 1.15283 1.18804 1.29773 0.92186 0.99903 0.99870 0.76107 0.90048 0.91431 0.89900 0.94493 0.93650 0.89747 0.89943 0.89153 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.46 29.54 68.60 2.03 44.49 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.65 9.28 25.60 0.24 -30.41 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.33 5.43 85.63 0.47 16.80 16 10 N -0.72 -32.59 5.46 -482.30 -2.63 -35.22 16 11 C 0.69 30.44 8.30 179.05 1.49 31.93 16 12 O -0.65 -35.00 15.84 -4.00 -0.06 -35.07 16 13 N -0.62 -19.22 2.24 -832.27 -1.86 -21.08 16 14 C 0.10 2.51 5.71 86.70 0.50 3.00 16 15 C 0.06 1.25 4.60 45.54 0.21 1.46 16 16 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 17 C -0.12 -2.76 6.17 31.54 0.19 -2.56 16 18 C -0.12 -2.61 6.18 31.54 0.19 -2.41 16 19 C 0.06 1.12 4.59 45.36 0.21 1.32 16 20 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 21 C 0.07 1.60 5.67 86.53 0.49 2.09 16 22 N -0.65 -10.72 7.39 -452.43 -3.34 -14.06 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 25 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 26 H 0.40 15.17 5.83 -92.70 -0.54 14.63 16 27 H 0.08 1.76 8.13 -2.39 -0.02 1.75 16 28 H 0.07 2.16 7.15 -2.39 -0.02 2.15 16 29 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.04 1.12 7.85 -2.39 -0.02 1.10 16 31 H 0.04 1.26 7.84 -2.38 -0.02 1.24 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.89 5.70 -2.39 -0.01 1.87 16 34 H 0.09 1.58 8.13 -2.38 -0.02 1.56 16 35 H 0.35 4.74 8.34 -89.69 -0.75 3.99 16 Total: -1.00 -73.95 280.17 -1.33 -75.27 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.18 Total: 20.36 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 4.44 Total: 21.90 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -7.55 Total: -126.95 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.06 Total: -35.07 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.95 -1.33 -75.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350204288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.185 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds