Wall clock time and date at job start Sun Mar 29 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00075 * 2 1 4 4 C 1.53002 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47367 * 64.99632 * 4 3 2 6 6 C 1.36931 * 120.00540 * 270.00437 * 5 4 3 7 7 H 1.07996 * 120.00498 * 141.45783 * 6 5 4 8 8 C 1.38822 * 119.99656 * 321.45419 * 6 5 4 9 9 N 1.31620 * 119.99923 * 338.83469 * 8 6 5 10 10 Si 1.86796 * 119.99870 * 158.83253 * 8 6 5 11 11 H 1.48496 * 109.47403 * 90.00282 * 10 8 6 12 12 H 1.48501 * 109.47395 * 210.00073 * 10 8 6 13 13 H 1.48500 * 109.47176 * 330.00076 * 10 8 6 14 14 C 1.46504 * 119.99576 * 89.99996 * 5 4 3 15 15 C 1.53001 * 109.47239 * 264.71055 * 14 5 4 16 16 C 1.50695 * 109.46967 * 180.02562 * 15 14 5 17 17 C 1.39872 * 126.04173 * 269.99861 * 16 15 14 18 18 N 1.30834 * 108.20296 * 179.74149 * 17 16 15 19 19 N 1.40081 * 108.20562 * 0.40787 * 18 17 16 20 20 H 0.97001 * 126.03710 * 179.85915 * 19 18 17 21 21 C 1.34949 * 107.92803 * 359.58698 * 19 18 17 22 22 H 1.09002 * 109.47157 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46895 * 300.00092 * 1 2 3 24 24 H 1.08998 * 109.47131 * 59.99691 * 1 2 3 25 25 H 1.08994 * 109.47131 * 60.00105 * 3 2 1 26 26 H 1.08999 * 109.47049 * 299.99992 * 3 2 1 27 27 H 1.09004 * 109.46710 * 305.00264 * 4 3 2 28 28 H 1.08995 * 109.47265 * 185.00195 * 4 3 2 29 29 H 0.96997 * 119.99642 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.46892 * 144.70845 * 14 5 4 31 31 H 1.08998 * 109.47264 * 24.71312 * 14 5 4 32 32 H 1.08994 * 109.46910 * 60.00087 * 15 14 5 33 33 H 1.08996 * 109.46705 * 300.00172 * 15 14 5 34 34 H 1.07997 * 125.89663 * 359.97438 * 17 16 15 35 35 H 1.07994 * 126.12935 * 180.22772 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8067 -1.3100 -2.2419 8 6 4.5923 -1.5177 -0.2589 9 7 5.3199 -0.9147 0.6573 10 14 4.2265 -3.3434 -0.1086 11 1 5.2890 -4.1194 -0.7970 12 1 4.1867 -3.7238 1.3263 13 1 2.9130 -3.6383 -0.7354 14 6 4.2864 1.4006 -2.4148 15 6 3.0583 1.4882 -3.3231 16 6 3.3781 2.3479 -4.5187 17 6 3.2010 3.7325 -4.6078 18 7 3.5952 4.1195 -5.7938 19 7 4.0276 2.9904 -6.5013 20 1 4.3711 2.9824 -7.4084 21 6 3.8875 1.9167 -5.6959 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8514 0.5681 0.8410 28 1 3.9785 2.1764 0.0890 29 1 5.6658 -1.4182 1.4107 30 1 5.1165 0.9607 -2.9674 31 1 4.5624 2.4004 -2.0796 32 1 2.2283 1.9281 -2.7704 33 1 2.7823 0.4884 -3.6582 34 1 2.8101 4.3722 -3.8304 35 1 4.1368 0.8962 -5.9462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460200558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:15 Heat of formation + Delta-G solvation = 49.064986 kcal Electronic energy + Delta-G solvation = -17335.924984 eV Core-core repulsion = 14564.716911 eV Total energy + Delta-G solvation = -2771.208073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88703 -37.19507 -35.47922 -32.70881 -31.15263 -30.73146 -28.84541 -26.88500 -25.58866 -23.92452 -22.07180 -21.61393 -20.13065 -19.58066 -17.41756 -16.58142 -15.66573 -14.94514 -14.67153 -14.32805 -14.28029 -13.95473 -13.63470 -13.41173 -12.82270 -12.54263 -11.93448 -11.86538 -11.70649 -11.02797 -10.84807 -10.72362 -10.63723 -10.49491 -10.22623 -9.86644 -9.70523 -9.56425 -9.42770 -8.71291 -8.40370 -8.08706 -6.38964 -5.61810 -3.18870 2.11213 3.07078 3.10678 3.47880 3.55082 3.61586 4.64032 4.75959 5.06332 5.17843 5.47559 5.59807 5.77544 5.80029 5.83745 5.86160 6.09877 6.14079 6.19816 6.35814 6.41394 6.44096 6.61275 6.73775 6.80643 6.88694 7.07105 7.22945 7.46003 7.73368 7.85692 7.98025 8.15379 8.70355 9.34955 9.98825 10.55449 11.39365 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023538 B = 0.007036 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.256524 B = 3978.703413 C = 4535.703642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.045 3.955 4 C 0.144 3.856 5 N -0.577 5.577 6 C -0.238 4.238 7 H 0.054 0.946 8 C 0.018 3.982 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.278 1.278 14 C 0.155 3.845 15 C -0.063 4.063 16 C -0.213 4.213 17 C 0.051 3.949 18 N -0.308 5.308 19 N -0.486 5.486 20 H 0.434 0.566 21 C 0.049 3.951 22 H 0.073 0.927 23 H 0.025 0.975 24 H 0.028 0.972 25 H 0.022 0.978 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.251 0.749 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.179 0.821 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 5.857 -7.633 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.034 4.034 4 C 0.017 3.983 5 N -0.297 5.297 6 C -0.368 4.368 7 H 0.072 0.928 8 C -0.182 4.182 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.028 3.972 15 C -0.105 4.105 16 C -0.225 4.225 17 C -0.135 4.135 18 N -0.131 5.131 19 N -0.194 5.194 20 H 0.277 0.723 21 C -0.098 4.098 22 H 0.092 0.908 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.196 0.804 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.191 6.599 -8.230 11.757 hybrid contribution -0.499 -1.425 0.239 1.529 sum -5.690 5.174 -7.991 11.091 Atomic orbital electron populations 1.22625 0.84411 1.01383 0.98355 1.88219 1.16398 1.27778 1.94804 1.23518 0.99031 0.84057 0.96827 1.21005 0.87413 0.96554 0.93354 1.43654 1.75616 1.02846 1.07548 1.18781 1.35463 0.81739 1.00823 0.92794 1.25056 0.96400 0.97514 0.99201 1.69987 1.34082 1.35742 1.13945 0.86429 0.78230 0.85974 0.76806 1.21846 1.21777 1.20342 1.20845 0.93499 0.93784 0.89042 1.20701 1.00598 0.97124 0.92032 1.20484 1.10183 0.94309 0.97533 1.23816 0.99582 0.95181 0.94966 1.77209 1.20426 1.08360 1.07058 1.46218 1.53197 1.04984 1.15039 0.72311 1.22428 1.01794 0.93631 0.91919 0.90834 0.95632 0.95306 0.96006 0.95125 0.88321 0.94221 0.93868 0.93906 0.94886 0.92278 0.91727 0.80412 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.84 10.18 -35.23 -0.36 -8.20 16 3 C 0.04 0.91 6.28 37.16 0.23 1.14 16 4 C 0.14 3.34 5.76 -4.04 -0.02 3.32 16 5 N -0.58 -14.10 2.41 -173.24 -0.42 -14.52 16 6 C -0.24 -6.49 8.95 -15.06 -0.13 -6.62 16 7 H 0.05 1.48 7.91 -52.49 -0.42 1.06 16 8 C 0.02 0.49 4.95 -17.43 -0.09 0.41 16 9 N -0.89 -26.08 11.53 55.49 0.64 -25.44 16 10 Si 0.90 22.31 29.60 -169.99 -5.03 17.28 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.16 3.20 5.70 -4.04 -0.02 3.18 16 15 C -0.06 -1.12 6.00 -27.88 -0.17 -1.28 16 16 C -0.21 -3.29 5.35 -105.05 -0.56 -3.85 16 17 C 0.05 0.75 11.96 -17.37 -0.21 0.55 16 18 N -0.31 -4.59 12.70 30.62 0.39 -4.20 16 19 N -0.49 -6.03 7.36 30.45 0.22 -5.80 16 20 H 0.43 3.79 8.96 -182.61 -1.64 2.15 16 21 C 0.05 0.65 11.90 -17.22 -0.20 0.44 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.58 6.48 -51.93 -0.34 0.24 16 27 H 0.10 2.66 5.58 -51.93 -0.29 2.37 16 28 H 0.04 0.85 7.86 -51.93 -0.41 0.44 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 32 H 0.06 1.04 6.48 -51.93 -0.34 0.71 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 297.27 15.07 4.48 4.48 Total: -1.00 -32.01 297.27 -6.48 -38.49 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.34 Total: -0.97 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.06 Total: -1.11 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.84 Total: -49.96 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.36 Total: -8.20 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.01 -6.48 -38.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460200558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.554 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds