Wall clock time and date at job start Sun Mar 29 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00075 * 2 1 4 4 C 1.53002 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47367 * 64.99632 * 4 3 2 6 6 C 1.36931 * 120.00540 * 270.00437 * 5 4 3 7 7 H 1.07996 * 120.00498 * 141.45783 * 6 5 4 8 8 C 1.38822 * 119.99656 * 321.45419 * 6 5 4 9 9 N 1.31620 * 119.99923 * 338.83469 * 8 6 5 10 10 Si 1.86796 * 119.99870 * 158.83253 * 8 6 5 11 11 H 1.48496 * 109.47403 * 90.00282 * 10 8 6 12 12 H 1.48501 * 109.47395 * 210.00073 * 10 8 6 13 13 H 1.48500 * 109.47176 * 330.00076 * 10 8 6 14 14 C 1.46504 * 119.99576 * 89.99996 * 5 4 3 15 15 C 1.53001 * 109.47239 * 264.71055 * 14 5 4 16 16 C 1.50695 * 109.46967 * 180.02562 * 15 14 5 17 17 C 1.39872 * 126.04173 * 269.99861 * 16 15 14 18 18 N 1.30834 * 108.20296 * 179.74149 * 17 16 15 19 19 N 1.40081 * 108.20562 * 0.40787 * 18 17 16 20 20 H 0.97001 * 126.03710 * 179.85915 * 19 18 17 21 21 C 1.34949 * 107.92803 * 359.58698 * 19 18 17 22 22 H 1.09002 * 109.47157 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46895 * 300.00092 * 1 2 3 24 24 H 1.08998 * 109.47131 * 59.99691 * 1 2 3 25 25 H 1.08994 * 109.47131 * 60.00105 * 3 2 1 26 26 H 1.08999 * 109.47049 * 299.99992 * 3 2 1 27 27 H 1.09004 * 109.46710 * 305.00264 * 4 3 2 28 28 H 1.08995 * 109.47265 * 185.00195 * 4 3 2 29 29 H 0.96997 * 119.99642 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.46892 * 144.70845 * 14 5 4 31 31 H 1.08998 * 109.47264 * 24.71312 * 14 5 4 32 32 H 1.08994 * 109.46910 * 60.00087 * 15 14 5 33 33 H 1.08996 * 109.46705 * 300.00172 * 15 14 5 34 34 H 1.07997 * 125.89663 * 359.97438 * 17 16 15 35 35 H 1.07994 * 126.12935 * 180.22772 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8067 -1.3100 -2.2419 8 6 4.5923 -1.5177 -0.2589 9 7 5.3199 -0.9147 0.6573 10 14 4.2265 -3.3434 -0.1086 11 1 5.2890 -4.1194 -0.7970 12 1 4.1867 -3.7238 1.3263 13 1 2.9130 -3.6383 -0.7354 14 6 4.2864 1.4006 -2.4148 15 6 3.0583 1.4882 -3.3231 16 6 3.3781 2.3479 -4.5187 17 6 3.2010 3.7325 -4.6078 18 7 3.5952 4.1195 -5.7938 19 7 4.0276 2.9904 -6.5013 20 1 4.3711 2.9824 -7.4084 21 6 3.8875 1.9167 -5.6959 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8514 0.5681 0.8410 28 1 3.9785 2.1764 0.0890 29 1 5.6658 -1.4182 1.4107 30 1 5.1165 0.9607 -2.9674 31 1 4.5624 2.4004 -2.0796 32 1 2.2283 1.9281 -2.7704 33 1 2.7823 0.4884 -3.6582 34 1 2.8101 4.3722 -3.8304 35 1 4.1368 0.8962 -5.9462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460200558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:15 Heat of formation + Delta-G solvation = 27.664915 kcal Electronic energy + Delta-G solvation = -17336.852960 eV Core-core repulsion = 14564.716911 eV Total energy + Delta-G solvation = -2772.136050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.98158 -38.82952 -37.19317 -34.31978 -32.75245 -32.05007 -30.41352 -28.44100 -27.06765 -25.69796 -23.56102 -22.77883 -21.94149 -20.76010 -18.64121 -18.41749 -17.26652 -16.65196 -16.39550 -15.63743 -15.56733 -15.39986 -15.25585 -14.98694 -14.24179 -13.97482 -13.46599 -13.34664 -13.28547 -12.81971 -12.56963 -12.38558 -12.31830 -12.25777 -11.87690 -11.54719 -11.44602 -11.22934 -10.50981 -10.39214 -10.22157 -9.36294 -8.36995 -7.66865 -5.28427 1.04227 1.48841 1.53072 1.62803 1.92193 2.15439 2.62626 3.27207 3.43123 3.78801 4.01968 4.17123 4.42776 4.49713 4.59083 4.68452 4.71198 4.77709 4.83121 4.87673 4.89365 5.03285 5.07293 5.09918 5.10396 5.54204 5.63604 5.77493 5.81502 5.89040 6.52164 6.56122 6.73880 6.79899 7.33322 8.02482 8.53792 9.28581 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023538 B = 0.007036 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.256524 B = 3978.703413 C = 4535.703642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.055 3.945 4 C 0.141 3.859 5 N -0.592 5.592 6 C -0.234 4.234 7 H 0.048 0.952 8 C -0.031 4.031 9 N -0.924 5.924 10 Si 0.947 3.053 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.276 1.276 14 C 0.157 3.843 15 C -0.039 4.039 16 C -0.242 4.242 17 C 0.048 3.952 18 N -0.329 5.329 19 N -0.472 5.472 20 H 0.450 0.550 21 C 0.063 3.937 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.246 0.754 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.195 0.805 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 6.305 -8.851 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.024 4.024 4 C 0.014 3.986 5 N -0.313 5.313 6 C -0.365 4.365 7 H 0.066 0.934 8 C -0.227 4.227 9 N -0.570 5.570 10 Si 0.777 3.223 11 H -0.213 1.213 12 H -0.224 1.224 13 H -0.202 1.202 14 C 0.032 3.968 15 C -0.080 4.080 16 C -0.254 4.254 17 C -0.138 4.138 18 N -0.152 5.152 19 N -0.182 5.182 20 H 0.297 0.703 21 C -0.085 4.085 22 H 0.099 0.901 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.212 0.788 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.241 7.075 -9.497 13.386 hybrid contribution -0.186 -1.516 0.539 1.620 sum -6.427 5.559 -8.958 12.347 Atomic orbital electron populations 1.22809 0.81719 1.02514 1.00021 1.88137 1.19466 1.28835 1.95182 1.23294 0.96625 0.83944 0.98524 1.20938 0.89896 0.96107 0.91615 1.43846 1.76191 1.02431 1.08830 1.18931 1.33860 0.83326 1.00338 0.93428 1.25631 0.96997 1.00631 0.99476 1.70106 1.35661 1.36738 1.14485 0.85603 0.78027 0.82453 0.76235 1.21297 1.22362 1.20162 1.20910 0.94533 0.93206 0.88195 1.20258 0.98714 0.96804 0.92217 1.20333 1.12777 0.94579 0.97696 1.24096 0.99241 0.95122 0.95346 1.77182 1.21237 1.09432 1.07379 1.46250 1.52136 1.04190 1.15652 0.70327 1.22783 0.99741 0.94727 0.91258 0.90106 0.93609 0.93836 0.93784 0.93641 0.92118 0.93061 0.94449 0.95439 0.94143 0.92275 0.93208 0.78821 0.78520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.14 10.18 -148.98 -1.52 -18.66 16 3 C 0.05 2.13 6.28 71.98 0.45 2.59 16 4 C 0.14 6.55 5.76 86.38 0.50 7.05 16 5 N -0.59 -28.92 2.41 -701.99 -1.69 -30.61 16 6 C -0.23 -12.80 8.95 84.04 0.75 -12.05 16 7 H 0.05 2.62 7.91 -2.91 -0.02 2.60 16 8 C -0.03 -1.77 4.95 84.86 0.42 -1.35 16 9 N -0.92 -55.02 11.53 21.65 0.25 -54.77 16 10 Si 0.95 46.30 29.60 68.60 2.03 48.33 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 C 0.16 6.40 5.70 86.38 0.49 6.90 16 15 C -0.04 -1.32 6.00 29.85 0.18 -1.14 16 16 C -0.24 -7.00 5.35 -20.14 -0.11 -7.11 16 17 C 0.05 1.31 11.96 85.24 1.02 2.33 16 18 N -0.33 -9.11 12.70 -57.03 -0.72 -9.83 16 19 N -0.47 -10.50 7.36 -57.59 -0.42 -10.93 16 20 H 0.45 6.62 8.96 -213.33 -1.91 4.70 16 21 C 0.06 1.52 11.90 83.54 0.99 2.51 16 22 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.63 6.48 -2.39 -0.02 1.61 16 27 H 0.06 3.34 5.58 -2.38 -0.01 3.33 16 28 H 0.05 2.19 7.86 -2.39 -0.02 2.17 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 31 H 0.04 1.57 7.83 -2.39 -0.02 1.55 16 32 H 0.06 1.99 6.48 -2.39 -0.02 1.97 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.20 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -68.36 297.27 3.04 -65.31 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -0.83 Total: 9.36 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.95 Total: 1.79 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -2.59 Total: -106.14 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.52 Total: -18.66 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -68.36 3.04 -65.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460200558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.978 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds