Wall clock time and date at job start Sun Mar 29 2020 22:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47005 * 2 1 4 4 C 1.53004 * 109.47282 * 120.00208 * 2 1 3 5 5 C 1.50696 * 109.46627 * 294.49795 * 4 2 1 6 6 H 1.08001 * 120.00494 * 2.12239 * 5 4 2 7 7 C 1.37884 * 119.99713 * 182.13141 * 5 4 2 8 8 N 1.31517 * 119.99999 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47186 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99641 * 9 7 5 12 12 H 1.48504 * 109.47014 * 239.99635 * 9 7 5 13 13 N 1.46899 * 109.47075 * 240.00288 * 2 1 3 14 14 C 1.48726 * 111.00066 * 177.55595 * 13 2 1 15 15 C 1.54421 * 104.36325 * 199.09344 * 14 13 2 16 16 H 1.08997 * 112.51213 * 262.51079 * 15 14 13 17 17 C 1.51414 * 109.01884 * 136.31745 * 15 14 13 18 18 O 1.20824 * 125.89079 * 89.51868 * 17 15 14 19 19 O 1.34511 * 108.22446 * 269.52493 * 17 15 14 20 20 C 1.47812 * 108.52310 * 326.05246 * 19 17 15 21 21 C 1.54258 * 104.31102 * 32.74488 * 20 19 17 22 22 H 1.08999 * 113.00562 * 219.38729 * 21 20 19 23 23 C 1.48733 * 111.00367 * 63.02283 * 13 2 1 24 24 H 1.09003 * 109.47005 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47054 * 300.00017 * 1 2 3 26 26 H 1.09003 * 109.47061 * 59.99845 * 1 2 3 27 27 H 1.09001 * 109.46661 * 54.49475 * 4 2 1 28 28 H 1.08995 * 109.46953 * 174.49602 * 4 2 1 29 29 H 0.96996 * 120.00013 * 180.02562 * 8 7 5 30 30 H 1.08997 * 110.45021 * 317.80831 * 14 13 2 31 31 H 1.08993 * 110.45734 * 80.37164 * 14 13 2 32 32 H 1.09001 * 110.56884 * 274.19549 * 20 19 17 33 33 H 1.08997 * 110.90899 * 151.46882 * 20 19 17 34 34 H 1.08995 * 110.46421 * 279.69180 * 23 13 2 35 35 H 1.09000 * 110.45804 * 42.26361 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6520 0.0634 2.4758 6 1 1.0677 0.9663 2.3769 7 6 2.0431 -0.3713 3.7246 8 7 2.7544 -1.4709 3.8451 9 14 1.5628 0.6018 5.2450 10 1 0.7696 1.7907 4.8418 11 1 0.7489 -0.2550 6.1444 12 1 2.7885 1.0436 5.9577 13 7 2.0197 -0.6924 -1.1995 14 6 3.5052 -0.6612 -1.2638 15 6 3.8308 -0.9584 -2.7438 16 1 4.0764 -2.0065 -2.9147 17 6 4.9173 -0.0122 -3.2095 18 8 6.1071 -0.2110 -3.1405 19 8 4.3297 1.0879 -3.7132 20 6 3.0644 0.6880 -4.3644 21 6 2.5631 -0.5043 -3.5238 22 1 2.1246 -1.2978 -4.1289 23 6 1.6035 0.0230 -2.4352 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.5984 -1.7166 1.2998 28 1 3.1255 -0.8074 1.2013 29 1 3.0292 -1.7769 4.7236 30 1 3.8780 0.3235 -0.9821 31 1 3.9307 -1.4296 -0.6185 32 1 3.2451 0.3757 -5.3930 33 1 2.3390 1.5011 -4.3374 34 1 0.5713 -0.2201 -2.6870 35 1 1.7229 1.0993 -2.3109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460567894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:03 Heat of formation + Delta-G solvation = -76.472104 kcal Electronic energy + Delta-G solvation = -17567.709538 eV Core-core repulsion = 14758.765017 eV Total energy + Delta-G solvation = -2808.944521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37265 -38.26887 -37.14827 -34.32440 -32.34687 -30.39258 -29.44252 -27.04635 -25.82181 -23.62128 -22.48033 -21.02210 -20.56058 -19.18025 -17.34650 -16.65086 -16.45591 -16.09586 -15.42738 -14.71311 -14.49490 -14.10628 -13.69794 -13.42087 -13.02389 -12.56605 -12.32580 -12.04252 -11.65307 -11.60199 -11.29200 -11.24129 -10.99683 -10.90588 -10.87909 -10.57237 -10.40115 -10.11210 -9.97614 -9.26832 -9.12889 -8.37482 -8.09066 -6.02408 -4.04622 1.86044 3.20421 3.29560 3.37357 3.40408 3.83504 4.02516 4.37917 4.39483 4.48795 4.70036 4.96662 5.10457 5.22861 5.31939 5.33771 5.41548 5.73985 5.79847 5.84167 5.98975 6.03523 6.20737 6.24114 6.50859 6.55010 6.74098 7.01585 7.22525 7.36127 7.40067 7.67979 7.80384 8.01357 8.38799 9.01565 9.59144 11.09031 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.005957 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.940765 B = 4699.320741 C = 5109.577981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 H 0.032 0.968 4 C 0.032 3.968 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.497 5.497 14 C 0.054 3.946 15 C -0.152 4.152 16 H 0.125 0.875 17 C 0.491 3.509 18 O -0.449 6.449 19 O -0.357 6.357 20 C 0.061 3.939 21 C -0.123 4.123 22 H 0.116 0.884 23 C 0.032 3.968 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.018 0.982 29 H 0.260 0.740 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 2.213 -16.056 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.035 4.035 3 H 0.050 0.950 4 C -0.005 4.005 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.222 5.222 14 C -0.074 4.074 15 C -0.172 4.172 16 H 0.143 0.857 17 C 0.330 3.670 18 O -0.330 6.330 19 O -0.275 6.275 20 C -0.013 4.013 21 C -0.142 4.142 22 H 0.134 0.866 23 C -0.096 4.096 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.255 1.691 -15.831 16.080 hybrid contribution 0.024 1.240 0.966 1.572 sum -2.232 2.931 -14.865 15.315 Atomic orbital electron populations 1.21715 0.94903 1.01713 1.00274 1.22094 0.95415 0.95536 0.90447 0.94960 1.19143 0.96388 0.95921 0.89078 1.21214 1.33846 1.09534 0.91171 0.92578 1.24995 0.95155 0.95085 0.99083 1.69975 1.37326 1.22300 1.23576 0.86561 0.78277 0.80099 0.83214 1.19777 1.20975 1.21043 1.65899 1.05718 1.48586 1.01980 1.22933 0.90658 1.01953 0.91873 1.23456 0.93521 1.01587 0.98656 0.85663 1.23167 0.88829 0.81148 0.73844 1.90694 1.16035 1.74464 1.51808 1.87549 1.37004 1.33408 1.69586 1.24450 0.82740 0.98324 0.95816 1.23305 0.95846 0.97791 0.97307 0.86581 1.23316 0.99123 0.96731 0.90450 0.92541 0.91386 0.95000 0.95763 0.96330 0.93012 0.93305 0.88237 0.89540 0.86841 0.89501 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.93 37.16 0.33 -1.98 16 2 C 0.07 1.45 1.87 -67.71 -0.13 1.32 16 3 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 4 C 0.03 0.81 4.47 -27.88 -0.12 0.68 16 5 C -0.52 -14.26 8.45 -34.44 -0.29 -14.55 16 6 H 0.06 1.50 7.01 -52.49 -0.37 1.13 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.50 -8.37 5.22 -221.69 -1.16 -9.53 16 14 C 0.05 0.90 4.98 -2.07 -0.01 0.89 16 15 C -0.15 -1.97 4.12 -89.28 -0.37 -2.34 16 16 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 17 C 0.49 7.34 7.50 36.36 0.27 7.62 16 18 O -0.45 -8.12 18.00 -18.32 -0.33 -8.45 16 19 O -0.36 -4.88 11.22 -39.60 -0.44 -5.33 16 20 C 0.06 0.53 7.29 37.82 0.28 0.81 16 21 C -0.12 -1.23 4.27 -87.83 -0.37 -1.61 16 22 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 23 C 0.03 0.40 4.91 -2.07 -0.01 0.39 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.30 6.94 -51.93 -0.36 0.94 16 26 H 0.03 0.47 6.97 -51.93 -0.36 0.11 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.50 6.69 -51.93 -0.35 0.15 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.05 0.88 7.57 -51.93 -0.39 0.49 16 31 H 0.10 1.80 7.45 -51.93 -0.39 1.42 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.78 7.59 -51.93 -0.39 0.39 16 34 H 0.09 0.97 7.59 -51.93 -0.39 0.58 16 35 H 0.05 0.61 7.33 -51.93 -0.38 0.23 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -31.87 282.98 -7.52 -39.39 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -5.05 Total: -3.69 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.52 Total: -7.23 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.42 Total: -35.40 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.77 Total: -13.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.87 -7.52 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460567894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.082 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds