Wall clock time and date at job start Sun Mar 29 2020 22:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47005 * 2 1 4 4 C 1.53004 * 109.47282 * 120.00208 * 2 1 3 5 5 C 1.50696 * 109.46627 * 294.49795 * 4 2 1 6 6 H 1.08001 * 120.00494 * 2.12239 * 5 4 2 7 7 C 1.37884 * 119.99713 * 182.13141 * 5 4 2 8 8 N 1.31517 * 119.99999 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47186 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99641 * 9 7 5 12 12 H 1.48504 * 109.47014 * 239.99635 * 9 7 5 13 13 N 1.46899 * 109.47075 * 240.00288 * 2 1 3 14 14 C 1.48726 * 111.00066 * 177.55595 * 13 2 1 15 15 C 1.54421 * 104.36325 * 199.09344 * 14 13 2 16 16 H 1.08997 * 112.51213 * 262.51079 * 15 14 13 17 17 C 1.51414 * 109.01884 * 136.31745 * 15 14 13 18 18 O 1.20824 * 125.89079 * 89.51868 * 17 15 14 19 19 O 1.34511 * 108.22446 * 269.52493 * 17 15 14 20 20 C 1.47812 * 108.52310 * 326.05246 * 19 17 15 21 21 C 1.54258 * 104.31102 * 32.74488 * 20 19 17 22 22 H 1.08999 * 113.00562 * 219.38729 * 21 20 19 23 23 C 1.48733 * 111.00367 * 63.02283 * 13 2 1 24 24 H 1.09003 * 109.47005 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47054 * 300.00017 * 1 2 3 26 26 H 1.09003 * 109.47061 * 59.99845 * 1 2 3 27 27 H 1.09001 * 109.46661 * 54.49475 * 4 2 1 28 28 H 1.08995 * 109.46953 * 174.49602 * 4 2 1 29 29 H 0.96996 * 120.00013 * 180.02562 * 8 7 5 30 30 H 1.08997 * 110.45021 * 317.80831 * 14 13 2 31 31 H 1.08993 * 110.45734 * 80.37164 * 14 13 2 32 32 H 1.09001 * 110.56884 * 274.19549 * 20 19 17 33 33 H 1.08997 * 110.90899 * 151.46882 * 20 19 17 34 34 H 1.08995 * 110.46421 * 279.69180 * 23 13 2 35 35 H 1.09000 * 110.45804 * 42.26361 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6520 0.0634 2.4758 6 1 1.0677 0.9663 2.3769 7 6 2.0431 -0.3713 3.7246 8 7 2.7544 -1.4709 3.8451 9 14 1.5628 0.6018 5.2450 10 1 0.7696 1.7907 4.8418 11 1 0.7489 -0.2550 6.1444 12 1 2.7885 1.0436 5.9577 13 7 2.0197 -0.6924 -1.1995 14 6 3.5052 -0.6612 -1.2638 15 6 3.8308 -0.9584 -2.7438 16 1 4.0764 -2.0065 -2.9147 17 6 4.9173 -0.0122 -3.2095 18 8 6.1071 -0.2110 -3.1405 19 8 4.3297 1.0879 -3.7132 20 6 3.0644 0.6880 -4.3644 21 6 2.5631 -0.5043 -3.5238 22 1 2.1246 -1.2978 -4.1289 23 6 1.6035 0.0230 -2.4352 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.5984 -1.7166 1.2998 28 1 3.1255 -0.8074 1.2013 29 1 3.0292 -1.7769 4.7236 30 1 3.8780 0.3235 -0.9821 31 1 3.9307 -1.4296 -0.6185 32 1 3.2451 0.3757 -5.3930 33 1 2.3390 1.5011 -4.3374 34 1 0.5713 -0.2201 -2.6870 35 1 1.7229 1.0993 -2.3109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460567894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:02 Heat of formation + Delta-G solvation = -98.631469 kcal Electronic energy + Delta-G solvation = -17568.670441 eV Core-core repulsion = 14758.765017 eV Total energy + Delta-G solvation = -2809.905423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.44303 -39.57293 -38.36713 -35.92952 -34.20608 -31.48856 -30.90518 -28.72350 -26.99829 -25.28356 -23.99120 -22.03186 -21.63594 -20.78744 -18.70671 -18.34362 -17.54111 -17.15217 -16.83060 -16.61360 -15.63498 -15.56307 -15.10205 -14.72125 -14.35929 -14.04196 -13.64572 -13.60262 -13.25604 -12.90498 -12.78115 -12.67822 -12.50139 -12.36017 -12.20239 -12.04255 -11.77735 -11.55031 -11.32468 -11.13768 -11.05155 -10.56295 -9.47875 -8.20491 -6.30463 0.73449 1.38773 1.39296 1.51932 2.21195 2.39192 2.77333 3.07367 3.13580 3.27590 3.45204 3.75732 4.04733 4.13664 4.26426 4.33503 4.38530 4.55457 4.60588 4.65088 4.67867 4.80890 4.91663 5.04458 5.07387 5.21388 5.40446 5.47438 5.55446 5.60093 5.76279 5.90377 6.10319 6.25388 6.30084 6.86258 7.38317 8.91990 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.005957 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.940765 B = 4699.320741 C = 5109.577981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.083 3.917 3 H 0.021 0.979 4 C 0.039 3.961 5 C -0.533 4.533 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.505 5.505 14 C 0.052 3.948 15 C -0.144 4.144 16 H 0.140 0.860 17 C 0.494 3.506 18 O -0.492 6.492 19 O -0.376 6.376 20 C 0.058 3.942 21 C -0.106 4.106 22 H 0.155 0.845 23 C 0.028 3.972 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.072 0.928 27 H -0.006 1.006 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 3.218 -17.999 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 H 0.039 0.961 4 C 0.002 3.998 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.229 5.229 14 C -0.076 4.076 15 C -0.165 4.165 16 H 0.158 0.842 17 C 0.335 3.665 18 O -0.377 6.377 19 O -0.294 6.294 20 C -0.014 4.014 21 C -0.124 4.124 22 H 0.173 0.827 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.012 0.988 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.131 0.869 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.336 2.713 -17.803 18.523 hybrid contribution 0.646 0.932 1.533 1.906 sum -3.690 3.644 -16.271 17.077 Atomic orbital electron populations 1.21618 0.92844 1.01784 1.01493 1.21773 0.96890 0.94108 0.89752 0.96055 1.18968 0.94229 0.94853 0.91741 1.21638 1.33496 1.09777 0.92200 0.91888 1.25952 0.95089 0.96103 1.02692 1.70117 1.38706 1.24164 1.24451 0.85439 0.78043 0.78917 0.78902 1.18337 1.20298 1.20841 1.65809 1.05431 1.49077 1.02610 1.22788 0.90879 0.99707 0.94254 1.23400 0.94711 1.02177 0.96183 0.84178 1.23423 0.88543 0.81485 0.73042 1.90663 1.17882 1.75579 1.53570 1.87526 1.39070 1.33225 1.69623 1.24916 0.81107 0.98634 0.96744 1.23400 0.93240 0.99217 0.96588 0.82712 1.23536 1.01156 0.96536 0.88735 0.92987 0.92962 0.90936 0.98782 0.99546 0.92900 0.95620 0.91228 0.85926 0.84392 0.86922 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.93 71.98 0.64 -3.48 16 2 C 0.08 3.33 1.87 44.92 0.08 3.41 16 3 H 0.02 0.90 7.99 -2.39 -0.02 0.88 16 4 C 0.04 2.08 4.47 29.85 0.13 2.22 16 5 C -0.53 -29.99 8.45 25.60 0.22 -29.78 16 6 H 0.06 3.38 7.01 -2.91 -0.02 3.36 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 8 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.51 -16.66 5.22 -855.30 -4.46 -21.13 16 14 C 0.05 1.80 4.98 86.43 0.43 2.23 16 15 C -0.14 -3.58 4.12 -9.93 -0.04 -3.62 16 16 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 17 C 0.49 14.55 7.50 71.46 0.54 15.09 16 18 O -0.49 -18.25 18.00 21.57 0.39 -17.86 16 19 O -0.38 -9.59 11.22 -54.57 -0.61 -10.20 16 20 C 0.06 0.76 7.29 72.41 0.53 1.29 16 21 C -0.11 -1.68 4.27 -8.99 -0.04 -1.72 16 22 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 23 C 0.03 0.60 4.91 86.42 0.42 1.02 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.95 6.94 -2.39 -0.02 1.93 16 26 H 0.07 1.89 6.97 -2.39 -0.02 1.88 16 27 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H -0.01 -0.81 6.69 -2.39 -0.02 -0.82 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.03 0.98 7.57 -2.39 -0.02 0.96 16 31 H 0.07 2.75 7.45 -2.39 -0.02 2.73 16 32 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.14 1.18 7.59 -2.39 -0.02 1.16 16 34 H 0.11 1.91 7.59 -2.39 -0.02 1.90 16 35 H 0.05 1.08 7.33 -2.39 -0.02 1.06 16 Total: -1.00 -73.42 282.98 2.08 -71.34 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.07 Total: 1.55 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 3.38 Total: -12.92 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -4.18 Total: -78.41 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.22 Total: -28.06 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -73.42 2.08 -71.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460567894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.287 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds