Wall clock time and date at job start Sun Mar 29 2020 22:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47112 * 2 1 4 4 C 1.52997 * 109.47389 * 240.00114 * 2 1 3 5 5 C 1.50699 * 109.47473 * 174.99573 * 4 2 1 6 6 H 1.08006 * 119.99712 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00093 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46780 * 60.00383 * 9 7 5 11 11 H 1.48495 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47396 * 300.00468 * 9 7 5 13 13 N 1.46894 * 109.47248 * 120.00205 * 2 1 3 14 14 C 1.48725 * 111.00042 * 46.66368 * 13 2 1 15 15 C 1.54411 * 104.36494 * 199.09482 * 14 13 2 16 16 H 1.08997 * 111.93375 * 262.84327 * 15 14 13 17 17 C 1.51416 * 109.66742 * 136.59046 * 15 14 13 18 18 O 1.20824 * 125.89017 * 89.22880 * 17 15 14 19 19 O 1.34506 * 108.22373 * 269.26232 * 17 15 14 20 20 C 1.47267 * 108.85315 * 326.70206 * 19 17 15 21 21 C 1.54256 * 104.56762 * 31.66564 * 20 19 17 22 22 H 1.09002 * 113.00458 * 220.44710 * 21 20 19 23 23 C 1.48734 * 111.00198 * 292.13636 * 13 2 1 24 24 H 1.08997 * 109.47182 * 292.42284 * 1 2 3 25 25 H 1.09003 * 109.47210 * 52.42288 * 1 2 3 26 26 H 1.09006 * 109.46785 * 172.42225 * 1 2 3 27 27 H 1.09001 * 109.47185 * 295.00247 * 4 2 1 28 28 H 1.09012 * 109.47186 * 54.99972 * 4 2 1 29 29 H 0.97005 * 120.00151 * 179.97438 * 8 7 5 30 30 H 1.09004 * 110.45342 * 317.81537 * 14 13 2 31 31 H 1.08996 * 110.45635 * 80.24597 * 14 13 2 32 32 H 1.08997 * 110.19360 * 273.15548 * 20 19 17 33 33 H 1.09006 * 111.03875 * 150.60065 * 20 19 17 34 34 H 1.09001 * 110.45822 * 42.25283 * 23 13 2 35 35 H 1.09000 * 110.45600 * 279.68467 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3579 8 7 3.5766 -1.8377 -3.2995 9 14 6.0922 -1.0620 -2.4362 10 1 6.6839 -1.6881 -1.2264 11 1 6.5872 -1.7619 -3.6487 12 1 6.4855 0.3687 -2.4958 13 7 2.0197 -0.6925 1.1993 14 6 1.2990 -1.9772 1.4046 15 6 1.5454 -2.3217 2.8895 16 1 2.3706 -3.0230 3.0132 17 6 0.2573 -2.8062 3.5209 18 8 -0.1284 -3.9507 3.5543 19 8 -0.3840 -1.7426 4.0374 20 6 0.6141 -0.7737 4.5208 21 6 1.8171 -0.9495 3.5713 22 1 2.7764 -0.9091 4.0872 23 6 1.7041 0.0828 2.4288 24 1 -0.3633 0.3920 0.9499 25 1 -0.3634 0.6267 -0.8145 26 1 -0.3633 -1.0188 -0.1355 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2444 -4.0350 30 1 0.2331 -1.8505 1.2148 31 1 1.7106 -2.7524 0.7584 32 1 0.9031 -1.0104 5.5448 33 1 0.2313 0.2452 4.4612 34 1 0.6920 0.4843 2.3767 35 1 2.4271 0.8865 2.5684 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460567904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:04 Heat of formation + Delta-G solvation = -68.645307 kcal Electronic energy + Delta-G solvation = -17813.852715 eV Core-core repulsion = 15005.247589 eV Total energy + Delta-G solvation = -2808.605126 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38780 -38.37989 -37.21066 -34.16323 -32.30878 -30.08886 -29.32630 -27.37796 -25.71528 -23.83687 -22.48178 -20.91771 -20.72464 -18.85005 -17.32457 -16.50637 -16.24984 -16.09898 -15.52666 -14.77322 -14.57968 -14.24100 -13.52439 -13.31716 -13.06401 -12.62090 -12.27614 -11.91241 -11.79950 -11.54720 -11.34726 -11.20362 -11.10087 -10.80572 -10.67254 -10.57670 -10.39074 -10.17598 -9.92305 -9.27513 -9.05738 -8.29276 -7.83124 -5.91350 -3.90084 1.88505 3.22393 3.38747 3.43111 3.45835 3.89899 4.09583 4.43846 4.52003 4.54695 4.76334 5.02173 5.14452 5.29169 5.36270 5.45674 5.48210 5.65155 5.75532 5.80490 5.87794 5.95261 6.06802 6.23408 6.42947 6.55204 6.57945 6.86907 7.25649 7.41413 7.42059 7.73630 7.87366 8.08045 8.52927 9.15197 9.71857 11.20563 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.006471 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.658714 B = 4325.636793 C = 4395.815415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.074 3.926 3 H 0.074 0.926 4 C 0.033 3.967 5 C -0.495 4.495 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.470 5.470 14 C 0.046 3.954 15 C -0.152 4.152 16 H 0.125 0.875 17 C 0.492 3.508 18 O -0.450 6.450 19 O -0.358 6.358 20 C 0.061 3.939 21 C -0.122 4.122 22 H 0.116 0.884 23 C 0.024 3.976 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.259 0.741 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 4.087 14.381 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 H 0.092 0.908 4 C -0.004 4.004 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.193 5.193 14 C -0.083 4.083 15 C -0.172 4.172 16 H 0.143 0.857 17 C 0.331 3.669 18 O -0.332 6.332 19 O -0.276 6.276 20 C -0.013 4.013 21 C -0.141 4.141 22 H 0.134 0.866 23 C -0.104 4.104 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.495 3.411 14.144 15.228 hybrid contribution 0.279 0.180 -0.102 0.347 sum -4.216 3.591 14.043 15.095 Atomic orbital electron populations 1.22552 0.99437 1.01836 1.00744 1.22094 0.90354 0.98732 0.92262 0.90760 1.19133 0.96418 0.95296 0.89585 1.21114 0.91710 1.33357 1.07124 0.92199 1.25008 0.98087 0.95778 0.95955 1.69948 1.35404 1.36674 1.12310 0.86679 0.86254 0.77981 0.77143 1.20352 1.21623 1.20501 1.66078 1.50835 1.01612 1.00794 1.23069 0.98057 0.95536 0.91590 1.23416 0.97163 0.98303 0.98327 0.85707 1.23205 0.84916 0.83851 0.74904 1.90689 1.70830 1.16554 1.55115 1.87405 1.36008 1.30086 1.74111 1.24374 0.86633 0.92746 0.97576 1.23274 0.99248 0.94894 0.96695 0.86602 1.23409 1.00280 0.96325 0.90366 0.93787 0.92220 0.92514 0.96419 0.96208 0.93180 0.92903 0.88289 0.89697 0.86930 0.93240 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.09 37.16 0.30 -2.79 16 2 C 0.07 1.42 2.29 -67.72 -0.15 1.27 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.81 4.48 -27.88 -0.12 0.69 16 5 C -0.49 -13.58 8.84 -34.44 -0.30 -13.88 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.47 -8.26 5.08 -221.70 -1.13 -9.39 16 14 C 0.05 0.76 5.08 -2.07 -0.01 0.75 16 15 C -0.15 -2.07 4.08 -89.29 -0.36 -2.44 16 16 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.49 7.37 7.57 36.36 0.28 7.65 16 18 O -0.45 -8.13 18.00 -18.32 -0.33 -8.46 16 19 O -0.36 -4.82 11.19 -39.59 -0.44 -5.26 16 20 C 0.06 0.55 7.29 37.81 0.28 0.82 16 21 C -0.12 -1.31 4.27 -87.84 -0.37 -1.69 16 22 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 23 C 0.02 0.32 5.74 -2.07 -0.01 0.30 16 24 H 0.04 0.63 6.15 -51.93 -0.32 0.31 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.97 6.44 -51.93 -0.33 0.64 16 27 H 0.02 0.47 7.17 -51.93 -0.37 0.10 16 28 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.05 0.89 5.07 -51.93 -0.26 0.63 16 31 H 0.10 1.88 7.62 -51.93 -0.40 1.48 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.79 7.57 -51.93 -0.39 0.39 16 34 H 0.05 0.61 5.41 -51.93 -0.28 0.33 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 280.02 15.07 4.22 4.22 Total: -1.00 -31.90 280.02 -7.41 -39.31 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -4.86 Total: -2.91 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.59 Total: -7.94 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.39 Total: -35.70 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.77 Total: -13.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.90 -7.41 -39.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460567904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.333 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds