Wall clock time and date at job start Sun Mar 29 2020 22:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47112 * 2 1 4 4 C 1.52997 * 109.47389 * 240.00114 * 2 1 3 5 5 C 1.50699 * 109.47473 * 174.99573 * 4 2 1 6 6 H 1.08006 * 119.99712 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00093 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46780 * 60.00383 * 9 7 5 11 11 H 1.48495 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47396 * 300.00468 * 9 7 5 13 13 N 1.46894 * 109.47248 * 120.00205 * 2 1 3 14 14 C 1.48725 * 111.00042 * 46.66368 * 13 2 1 15 15 C 1.54411 * 104.36494 * 199.09482 * 14 13 2 16 16 H 1.08997 * 111.93375 * 262.84327 * 15 14 13 17 17 C 1.51416 * 109.66742 * 136.59046 * 15 14 13 18 18 O 1.20824 * 125.89017 * 89.22880 * 17 15 14 19 19 O 1.34506 * 108.22373 * 269.26232 * 17 15 14 20 20 C 1.47267 * 108.85315 * 326.70206 * 19 17 15 21 21 C 1.54256 * 104.56762 * 31.66564 * 20 19 17 22 22 H 1.09002 * 113.00458 * 220.44710 * 21 20 19 23 23 C 1.48734 * 111.00198 * 292.13636 * 13 2 1 24 24 H 1.08997 * 109.47182 * 292.42284 * 1 2 3 25 25 H 1.09003 * 109.47210 * 52.42288 * 1 2 3 26 26 H 1.09006 * 109.46785 * 172.42225 * 1 2 3 27 27 H 1.09001 * 109.47185 * 295.00247 * 4 2 1 28 28 H 1.09012 * 109.47186 * 54.99972 * 4 2 1 29 29 H 0.97005 * 120.00151 * 179.97438 * 8 7 5 30 30 H 1.09004 * 110.45342 * 317.81537 * 14 13 2 31 31 H 1.08996 * 110.45635 * 80.24597 * 14 13 2 32 32 H 1.08997 * 110.19360 * 273.15548 * 20 19 17 33 33 H 1.09006 * 111.03875 * 150.60065 * 20 19 17 34 34 H 1.09001 * 110.45822 * 42.25283 * 23 13 2 35 35 H 1.09000 * 110.45600 * 279.68467 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3579 8 7 3.5766 -1.8377 -3.2995 9 14 6.0922 -1.0620 -2.4362 10 1 6.6839 -1.6881 -1.2264 11 1 6.5872 -1.7619 -3.6487 12 1 6.4855 0.3687 -2.4958 13 7 2.0197 -0.6925 1.1993 14 6 1.2990 -1.9772 1.4046 15 6 1.5454 -2.3217 2.8895 16 1 2.3706 -3.0230 3.0132 17 6 0.2573 -2.8062 3.5209 18 8 -0.1284 -3.9507 3.5543 19 8 -0.3840 -1.7426 4.0374 20 6 0.6141 -0.7737 4.5208 21 6 1.8171 -0.9495 3.5713 22 1 2.7764 -0.9091 4.0872 23 6 1.7041 0.0828 2.4288 24 1 -0.3633 0.3920 0.9499 25 1 -0.3634 0.6267 -0.8145 26 1 -0.3633 -1.0188 -0.1355 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2444 -4.0350 30 1 0.2331 -1.8505 1.2148 31 1 1.7106 -2.7524 0.7584 32 1 0.9031 -1.0104 5.5448 33 1 0.2313 0.2452 4.4612 34 1 0.6920 0.4843 2.3767 35 1 2.4271 0.8865 2.5684 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460567904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:04 Heat of formation + Delta-G solvation = -90.475563 kcal Electronic energy + Delta-G solvation = -17814.799346 eV Core-core repulsion = 15005.247589 eV Total energy + Delta-G solvation = -2809.551757 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.46863 -39.68269 -38.40749 -35.70751 -34.17906 -31.16433 -30.74976 -29.15283 -26.71663 -25.49441 -24.12931 -21.95343 -21.80186 -20.36661 -18.38185 -18.36030 -17.58059 -17.25740 -16.79231 -16.47003 -15.89698 -15.54440 -14.93566 -14.62030 -14.31475 -14.06455 -13.76908 -13.53618 -13.21234 -12.89862 -12.77453 -12.54996 -12.46086 -12.39595 -12.28774 -11.87862 -11.82916 -11.47372 -11.23447 -11.12060 -11.06910 -10.48120 -9.18018 -8.09697 -6.15490 0.75809 1.43365 1.46271 1.53527 2.22661 2.48123 2.82923 3.11188 3.24199 3.39661 3.48392 3.78383 4.08296 4.16333 4.18544 4.32031 4.37007 4.52343 4.58494 4.64551 4.68430 4.79859 4.95887 4.97900 5.06230 5.18034 5.27138 5.44051 5.58669 5.66640 5.86111 6.04821 6.24330 6.27709 6.44400 6.99029 7.50977 9.02442 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.006471 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.658714 B = 4325.636793 C = 4395.815415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.078 0.922 4 C 0.037 3.963 5 C -0.501 4.501 6 H 0.064 0.936 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.267 1.267 13 N -0.494 5.494 14 C 0.047 3.953 15 C -0.148 4.148 16 H 0.129 0.871 17 C 0.498 3.502 18 O -0.492 6.492 19 O -0.370 6.370 20 C 0.061 3.939 21 C -0.108 4.108 22 H 0.145 0.855 23 C 0.024 3.976 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.043 0.957 27 H -0.013 1.013 28 H -0.009 1.009 29 H 0.258 0.742 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.061 0.939 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 5.947 16.921 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 H 0.096 0.904 4 C 0.000 4.000 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.785 3.215 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.192 1.192 13 N -0.218 5.218 14 C -0.081 4.081 15 C -0.169 4.169 16 H 0.147 0.853 17 C 0.340 3.660 18 O -0.376 6.376 19 O -0.288 6.288 20 C -0.012 4.012 21 C -0.126 4.126 22 H 0.162 0.838 23 C -0.104 4.104 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.005 0.995 28 H 0.009 0.991 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.696 5.312 16.712 17.921 hybrid contribution 0.005 -0.356 -0.891 0.959 sum -3.692 4.955 15.821 16.985 Atomic orbital electron populations 1.22428 0.97320 1.01342 1.02501 1.21750 0.92002 0.97871 0.90870 0.90393 1.18992 0.95469 0.93910 0.91637 1.21496 0.93082 1.32560 1.06826 0.91768 1.25916 1.03144 0.95590 0.95732 1.70100 1.37333 1.37993 1.13110 0.85585 0.80269 0.78487 0.77158 1.19517 1.21687 1.19178 1.65914 1.51476 1.02389 1.01979 1.22896 0.97411 0.94607 0.93230 1.23345 0.96824 1.00466 0.96259 0.85329 1.23319 0.84812 0.83648 0.74270 1.90664 1.71802 1.18444 1.56740 1.87391 1.37501 1.30103 1.73803 1.24800 0.84834 0.93162 0.98404 1.23335 1.01606 0.91518 0.96186 0.83756 1.23565 1.01426 0.96770 0.88601 0.90818 0.91902 0.93848 0.99487 0.99052 0.93323 0.93268 0.92072 0.86402 0.84123 0.92059 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 8.09 71.98 0.58 -5.13 16 2 C 0.08 3.21 2.29 44.91 0.10 3.31 16 3 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 4 C 0.04 1.92 4.48 29.85 0.13 2.05 16 5 C -0.50 -27.94 8.84 25.60 0.23 -27.71 16 6 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 7 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 8 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 N -0.49 -16.84 5.08 -855.33 -4.35 -21.19 16 14 C 0.05 1.59 5.08 86.43 0.44 2.03 16 15 C -0.15 -3.85 4.08 -9.93 -0.04 -3.89 16 16 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 17 C 0.50 14.39 7.57 71.46 0.54 14.93 16 18 O -0.49 -17.88 18.00 21.56 0.39 -17.49 16 19 O -0.37 -8.93 11.19 -54.52 -0.61 -9.54 16 20 C 0.06 0.80 7.29 72.41 0.53 1.32 16 21 C -0.11 -1.88 4.27 -8.99 -0.04 -1.92 16 22 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 23 C 0.02 0.53 5.74 86.42 0.50 1.03 16 24 H 0.07 1.93 6.15 -2.39 -0.01 1.91 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.50 6.44 -2.38 -0.02 1.49 16 27 H -0.01 -0.76 7.17 -2.39 -0.02 -0.77 16 28 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 29 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.05 1.68 5.07 -2.39 -0.01 1.67 16 31 H 0.06 2.48 7.62 -2.39 -0.02 2.47 16 32 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.14 1.13 7.57 -2.38 -0.02 1.11 16 34 H 0.06 1.24 5.41 -2.39 -0.01 1.23 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -71.97 280.02 2.26 -69.71 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.08 Total: 3.61 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.43 Total: -13.99 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -4.06 Total: -79.17 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.22 Total: -27.03 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.97 2.26 -69.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460567904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.766 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds