Wall clock time and date at job start Sun Mar 29 2020 22:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08994 * 109.47475 * 34.99765 * 14 13 2 16 16 C 1.53002 * 109.46906 * 274.99579 * 14 13 2 17 17 C 1.50708 * 109.46951 * 155.00178 * 14 13 2 18 18 N 1.31074 * 126.65837 * 45.01798 * 17 14 13 19 19 N 1.28842 * 107.98616 * 179.97438 * 18 17 14 20 20 N 1.28738 * 109.39990 * 0.02562 * 19 18 17 21 21 N 1.29019 * 108.80579 * 359.74439 * 20 19 18 22 22 C 1.46511 * 126.43666 * 180.24839 * 21 20 19 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 27 27 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 30 30 H 1.08995 * 109.47557 * 299.99938 * 16 14 13 31 31 H 1.08999 * 109.46813 * 60.00721 * 16 14 13 32 32 H 1.09004 * 109.46634 * 180.02562 * 16 14 13 33 33 H 1.08992 * 109.46845 * 270.17590 * 22 21 20 34 34 H 1.08998 * 109.46877 * 30.17888 * 22 21 20 35 35 H 1.08996 * 109.46759 * 150.17616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.5847 -0.3024 -1.2592 11 1 6.6822 -2.4360 -2.4070 12 1 6.4931 -0.3814 -3.6814 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2577 0.9330 2.2907 16 6 3.4111 0.9808 2.3224 17 6 1.9785 -0.5677 3.6260 18 7 2.6130 -1.6780 3.9136 19 7 2.2592 -2.0431 5.0974 20 7 1.4152 -1.1948 5.5723 21 7 1.2202 -0.2676 4.6966 22 6 0.3369 0.8925 4.8397 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7715 -1.2055 28 1 4.0615 -2.2523 -4.0302 29 1 1.4494 -1.4980 1.4101 30 1 4.2359 0.2704 2.3787 31 1 3.4862 1.5523 1.3973 32 1 3.4579 1.6595 3.1741 33 1 -0.6590 0.6377 4.4775 34 1 0.2795 1.1781 5.8901 35 1 0.7332 1.7248 4.2581 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460896886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:03 Heat of formation + Delta-G solvation = 113.104181 kcal Electronic energy + Delta-G solvation = -17390.972459 eV Core-core repulsion = 14654.834085 eV Total energy + Delta-G solvation = -2736.138374 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.12670 -37.60915 -35.68159 -33.93932 -32.27961 -30.89219 -28.52897 -28.14183 -27.26873 -24.48222 -23.29924 -22.85841 -20.85549 -19.76496 -17.53300 -17.24540 -16.40149 -15.71158 -15.23833 -14.34016 -14.15585 -13.91912 -13.69891 -13.19766 -12.79110 -12.74789 -12.19669 -12.07564 -11.96357 -11.78780 -11.49863 -11.36556 -11.02283 -10.88777 -10.87086 -10.63062 -10.43017 -10.10466 -9.99694 -9.31940 -8.97391 -8.23470 -7.79958 -5.85764 -3.83176 1.21675 1.91693 2.34668 3.41688 3.49822 3.54131 3.91248 4.04034 4.40313 4.57806 4.59860 4.80716 4.89377 5.18807 5.31489 5.45019 5.52390 5.58711 5.71832 5.74850 5.77980 5.88817 6.00723 6.13824 6.29124 6.49558 6.53361 6.91344 7.40370 7.60963 7.90276 7.94112 8.14527 8.59287 8.68909 9.21897 9.78538 11.26492 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.006329 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.618245 B = 4423.167293 C = 4848.428046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.070 0.930 4 C 0.034 3.966 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.642 5.642 14 C 0.172 3.828 15 H 0.058 0.942 16 C -0.136 4.136 17 C 0.187 3.813 18 N -0.274 5.274 19 N -0.080 5.080 20 N -0.106 5.106 21 N -0.314 5.314 22 C 0.079 3.921 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.256 0.744 29 H 0.339 0.661 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 9.204 13.433 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.089 0.911 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.275 5.275 14 C 0.058 3.942 15 H 0.075 0.925 16 C -0.195 4.195 17 C -0.091 4.091 18 N -0.122 5.122 19 N -0.074 5.074 20 N -0.092 5.092 21 N -0.116 5.116 22 C -0.063 4.063 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.223 8.086 13.976 17.689 hybrid contribution -0.375 0.846 -0.308 0.975 sum -7.598 8.931 13.668 18.009 Atomic orbital electron populations 1.22597 0.99469 1.01436 1.00642 1.21953 0.89810 0.98441 0.91862 0.91146 1.19108 0.96518 0.95493 0.89247 1.21169 0.91660 1.32835 1.06911 0.92066 1.24997 0.97988 0.95852 0.96082 1.69971 1.35108 1.36927 1.12515 0.86584 0.86515 0.77658 0.77488 1.19779 1.21287 1.21546 1.60695 1.58504 1.07515 1.00754 1.20093 0.99372 0.92049 0.82674 0.92465 1.21838 0.96235 0.99698 1.01749 1.26494 0.92749 0.95983 0.93909 1.75180 1.20567 1.09328 1.07157 1.78662 1.07193 1.18241 1.03287 1.78823 1.16304 0.97327 1.16732 1.48469 1.31797 1.20057 1.11318 1.22366 0.93449 0.84222 1.06287 0.92874 0.94753 0.91980 0.96220 0.96359 0.93410 0.84222 0.90421 0.90209 0.93514 0.88600 0.87554 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.15 37.16 0.34 -2.36 16 2 C 0.09 1.60 2.34 -67.71 -0.16 1.45 16 3 H 0.07 1.25 7.11 -51.93 -0.37 0.88 16 4 C 0.03 0.82 4.65 -27.88 -0.13 0.69 16 5 C -0.49 -13.29 8.84 -34.44 -0.30 -13.60 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.64 -11.30 5.76 -100.95 -0.58 -11.88 16 14 C 0.17 2.36 2.71 -68.86 -0.19 2.18 16 15 H 0.06 0.62 6.17 -51.93 -0.32 0.30 16 16 C -0.14 -1.90 9.38 37.16 0.35 -1.55 16 17 C 0.19 2.72 6.62 -155.43 -1.03 1.70 16 18 N -0.27 -4.94 12.36 32.70 0.40 -4.53 16 19 N -0.08 -1.41 13.43 60.35 0.81 -0.60 16 20 N -0.11 -1.58 13.29 60.35 0.80 -0.78 16 21 N -0.31 -3.77 3.75 -65.02 -0.24 -4.01 16 22 C 0.08 0.46 11.05 59.85 0.66 1.12 16 23 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 24 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.34 6.01 8.09 -39.29 -0.32 5.69 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.14 7.43 -51.93 -0.39 0.76 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.41 7.41 -51.93 -0.38 0.02 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -33.36 297.74 -4.25 -37.61 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.09 Total: -1.84 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.56 Total: -9.04 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 1.93 Total: -48.29 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.36 -4.25 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460896886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.714 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds