Wall clock time and date at job start Sun Mar 29 2020 22:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08994 * 109.47475 * 34.99765 * 14 13 2 16 16 C 1.53002 * 109.46906 * 274.99579 * 14 13 2 17 17 C 1.50708 * 109.46951 * 155.00178 * 14 13 2 18 18 N 1.31074 * 126.65837 * 45.01798 * 17 14 13 19 19 N 1.28842 * 107.98616 * 179.97438 * 18 17 14 20 20 N 1.28738 * 109.39990 * 0.02562 * 19 18 17 21 21 N 1.29019 * 108.80579 * 359.74439 * 20 19 18 22 22 C 1.46511 * 126.43666 * 180.24839 * 21 20 19 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 27 27 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 30 30 H 1.08995 * 109.47557 * 299.99938 * 16 14 13 31 31 H 1.08999 * 109.46813 * 60.00721 * 16 14 13 32 32 H 1.09004 * 109.46634 * 180.02562 * 16 14 13 33 33 H 1.08992 * 109.46845 * 270.17590 * 22 21 20 34 34 H 1.08998 * 109.46877 * 30.17888 * 22 21 20 35 35 H 1.08996 * 109.46759 * 150.17616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.5847 -0.3024 -1.2592 11 1 6.6822 -2.4360 -2.4070 12 1 6.4931 -0.3814 -3.6814 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2577 0.9330 2.2907 16 6 3.4111 0.9808 2.3224 17 6 1.9785 -0.5677 3.6260 18 7 2.6130 -1.6780 3.9136 19 7 2.2592 -2.0431 5.0974 20 7 1.4152 -1.1948 5.5723 21 7 1.2202 -0.2676 4.6966 22 6 0.3369 0.8925 4.8397 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7715 -1.2055 28 1 4.0615 -2.2523 -4.0302 29 1 1.4494 -1.4980 1.4101 30 1 4.2359 0.2704 2.3787 31 1 3.4862 1.5523 1.3973 32 1 3.4579 1.6595 3.1741 33 1 -0.6590 0.6377 4.4775 34 1 0.2795 1.1781 5.8901 35 1 0.7332 1.7248 4.2581 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460896886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:03 Heat of formation + Delta-G solvation = 87.883493 kcal Electronic energy + Delta-G solvation = -17392.066110 eV Core-core repulsion = 14654.834085 eV Total energy + Delta-G solvation = -2737.232025 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.22674 -38.92510 -36.66085 -35.47445 -34.11385 -32.11962 -29.69852 -29.24253 -28.80032 -25.67474 -24.94450 -24.12535 -22.02537 -21.21636 -18.51608 -18.30209 -18.25328 -17.18473 -16.54673 -16.19874 -15.28714 -14.77087 -14.56241 -14.53576 -14.20317 -13.80353 -13.57893 -13.41791 -13.18370 -13.16803 -13.04771 -12.67949 -12.56605 -12.38126 -12.25972 -12.10040 -11.83635 -11.77066 -11.25937 -11.03122 -10.96722 -10.43821 -9.10485 -8.04693 -6.07492 0.16464 1.08813 1.15323 1.42930 1.46441 1.57238 2.51731 2.88963 3.01141 3.30827 3.51988 3.85004 4.15749 4.23886 4.27870 4.30337 4.35231 4.48229 4.56778 4.59816 4.75646 4.78991 4.92888 5.02376 5.20525 5.28825 5.29679 5.42579 5.57250 5.72577 5.96058 6.31865 6.44422 6.59004 7.07949 7.55271 7.58078 9.07891 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029572 B = 0.006329 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.618245 B = 4423.167293 C = 4848.428046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H 0.081 0.919 4 C 0.035 3.965 5 C -0.489 4.489 6 H 0.064 0.936 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.291 1.291 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.178 3.822 15 H 0.104 0.896 16 C -0.135 4.135 17 C 0.187 3.813 18 N -0.318 5.318 19 N -0.117 5.117 20 N -0.105 5.105 21 N -0.294 5.294 22 C 0.058 3.942 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.062 0.938 26 H -0.002 1.002 27 H -0.016 1.016 28 H 0.256 0.744 29 H 0.335 0.665 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 11.688 14.947 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 H 0.100 0.900 4 C -0.002 4.002 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.204 4.204 8 N -0.586 5.586 9 Si 0.777 3.223 10 H -0.187 1.187 11 H -0.218 1.218 12 H -0.208 1.208 13 N -0.302 5.302 14 C 0.066 3.934 15 H 0.121 0.879 16 C -0.194 4.194 17 C -0.092 4.092 18 N -0.167 5.167 19 N -0.110 5.110 20 N -0.091 5.091 21 N -0.097 5.097 22 C -0.081 4.081 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.016 0.984 27 H 0.002 0.998 28 H 0.064 0.936 29 H 0.154 0.846 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.117 10.606 15.514 20.471 hybrid contribution -0.176 0.141 -0.723 0.758 sum -8.293 10.747 14.791 20.076 Atomic orbital electron populations 1.22466 0.96483 1.01563 1.02720 1.21584 0.92115 0.97607 0.89442 0.90044 1.19014 0.95176 0.94059 0.91996 1.21590 0.93382 1.31541 1.06225 0.91764 1.25830 1.02439 0.96024 0.96149 1.70101 1.36775 1.38418 1.13354 0.85608 0.81356 0.77365 0.77943 1.18665 1.21790 1.20798 1.60463 1.59121 1.08517 1.02103 1.20154 1.00834 0.91687 0.80756 0.87911 1.21829 0.95117 0.99381 1.03049 1.26423 0.92812 0.95326 0.94601 1.75072 1.22385 1.11458 1.07798 1.78635 1.08876 1.19806 1.03712 1.78709 1.15609 0.97584 1.17229 1.48840 1.30925 1.20246 1.09682 1.23065 0.93596 0.82796 1.08610 0.93812 0.90591 0.91897 0.98395 0.99801 0.93552 0.84637 0.93843 0.90619 0.90094 0.86303 0.85538 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 9.15 71.98 0.66 -3.99 16 2 C 0.10 3.54 2.34 44.91 0.11 3.64 16 3 H 0.08 2.66 7.11 -2.39 -0.02 2.64 16 4 C 0.04 1.74 4.65 29.85 0.14 1.88 16 5 C -0.49 -26.94 8.84 25.60 0.23 -26.72 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 8 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 9 Si 0.95 45.85 29.54 68.60 2.03 47.87 16 10 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.67 -22.69 5.76 -473.30 -2.73 -25.42 16 14 C 0.18 4.37 2.71 44.17 0.12 4.49 16 15 H 0.10 1.63 6.17 -2.39 -0.01 1.62 16 16 C -0.13 -3.41 9.38 71.98 0.68 -2.73 16 17 C 0.19 5.04 6.62 138.14 0.91 5.96 16 18 N -0.32 -11.40 12.36 -50.45 -0.62 -12.02 16 19 N -0.12 -4.10 13.43 37.01 0.50 -3.60 16 20 N -0.10 -2.95 13.29 37.02 0.49 -2.46 16 21 N -0.29 -6.12 3.75 -359.63 -1.35 -7.47 16 22 C 0.06 0.39 11.05 127.77 1.41 1.80 16 23 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 24 H 0.08 1.42 7.43 -2.39 -0.02 1.40 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 27 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.33 11.69 8.09 -89.69 -0.73 10.97 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.97 7.43 -2.39 -0.02 1.96 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.13 0.19 7.41 -2.39 -0.02 0.17 16 Total: -1.00 -76.02 297.74 3.67 -72.35 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.36 Total: 4.48 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.71 Total: -15.75 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.43 Total: -108.95 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.02 3.67 -72.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460896886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.231 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds