Wall clock time and date at job start Sun Mar 29 2020 22:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47674 * 2 1 4 4 C 1.52998 * 109.47095 * 120.00204 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 N 1.46904 * 109.47130 * 240.00012 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 H 1.08998 * 109.47333 * 324.99466 * 14 13 2 16 16 C 1.52999 * 109.47554 * 85.00338 * 14 13 2 17 17 C 1.50706 * 109.46881 * 205.00013 * 14 13 2 18 18 N 1.31065 * 126.65969 * 315.02589 * 17 14 13 19 19 N 1.28842 * 107.99269 * 179.97438 * 18 17 14 20 20 N 1.28745 * 109.39480 * 359.97438 * 19 18 17 21 21 N 1.29017 * 108.80611 * 359.74746 * 20 19 18 22 22 C 1.46503 * 126.43619 * 180.24697 * 21 20 19 23 23 H 1.09003 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47321 * 300.00145 * 1 2 3 25 25 H 1.08995 * 109.47138 * 60.00105 * 1 2 3 26 26 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 27 27 H 1.08998 * 109.47454 * 305.00112 * 4 2 1 28 28 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00235 * 321.04660 * 13 2 1 30 30 H 1.09005 * 109.46209 * 299.99849 * 16 14 13 31 31 H 1.08991 * 109.47137 * 59.99262 * 16 14 13 32 32 H 1.08990 * 109.47035 * 180.02562 * 16 14 13 33 33 H 1.09003 * 109.47381 * 270.17846 * 22 21 20 34 34 H 1.08996 * 109.47148 * 30.17965 * 22 21 20 35 35 H 1.08996 * 109.47201 * 150.17916 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2299 -1.1883 2.3610 8 7 3.5754 -1.8275 3.3057 9 14 6.0915 -1.0559 2.4401 10 1 6.5837 -0.2918 1.2657 11 1 6.4854 -0.3543 3.6881 12 1 6.6854 -2.4170 2.4288 13 7 2.0196 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3469 15 1 1.2576 0.9329 -2.2907 16 6 3.4111 0.9808 -2.3224 17 6 1.9786 -0.5677 -3.6259 18 7 2.6123 -1.6784 -3.9132 19 7 2.2581 -2.0440 -5.0967 20 7 1.4143 -1.1955 -5.5717 21 7 1.2118 -0.2735 -4.6923 22 6 0.3184 0.8794 -4.8302 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7516 -1.7716 1.2056 27 1 1.6053 -0.2619 2.1370 28 1 4.0594 -2.2306 4.0435 29 1 1.4495 -1.4979 -1.4101 30 1 3.4862 1.5524 -1.3973 31 1 4.2359 0.2705 -2.3786 32 1 3.4575 1.6601 -3.1735 33 1 0.8671 1.7142 -5.2663 34 1 -0.5174 0.6159 -5.4782 35 1 -0.0591 1.1660 -3.8487 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460896994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:08 Heat of formation + Delta-G solvation = 88.046644 kcal Electronic energy + Delta-G solvation = -17392.461191 eV Core-core repulsion = 14655.236241 eV Total energy + Delta-G solvation = -2737.224950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.22685 -38.92878 -36.66123 -35.47491 -34.11290 -32.12281 -29.70251 -29.23766 -28.80114 -25.68619 -24.94451 -24.12705 -22.01873 -21.21843 -18.52746 -18.30384 -18.25157 -17.18653 -16.54986 -16.20399 -15.28693 -14.77773 -14.56414 -14.53021 -14.20169 -13.79121 -13.58148 -13.43843 -13.18996 -13.16802 -13.03956 -12.68088 -12.55787 -12.37921 -12.26081 -12.10051 -11.84163 -11.75966 -11.26054 -11.03415 -10.97153 -10.43868 -9.10408 -8.04679 -6.07540 0.16678 1.08633 1.15336 1.42944 1.46400 1.57234 2.51713 2.88750 3.01768 3.30856 3.51600 3.79920 4.16119 4.23050 4.29646 4.31567 4.34539 4.48053 4.57334 4.60107 4.75989 4.78633 4.92746 5.02327 5.20478 5.28628 5.29713 5.42260 5.57348 5.72413 5.96074 6.31810 6.44452 6.59114 7.07903 7.55264 7.58078 9.07895 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.006323 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.659507 B = 4427.449693 C = 4852.690246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 H 0.081 0.919 4 C 0.035 3.965 5 C -0.489 4.489 6 H 0.064 0.936 7 C -0.009 4.009 8 N -0.944 5.944 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.291 1.291 13 N -0.670 5.670 14 C 0.179 3.821 15 H 0.103 0.897 16 C -0.134 4.134 17 C 0.187 3.813 18 N -0.318 5.318 19 N -0.116 5.116 20 N -0.105 5.105 21 N -0.293 5.293 22 C 0.059 3.941 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.075 0.925 26 H -0.016 1.016 27 H -0.002 1.002 28 H 0.256 0.744 29 H 0.335 0.665 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 11.592 -14.927 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.008 4.008 3 H 0.099 0.901 4 C -0.002 4.002 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.204 4.204 8 N -0.587 5.587 9 Si 0.777 3.223 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.218 1.218 13 N -0.303 5.303 14 C 0.066 3.934 15 H 0.121 0.879 16 C -0.193 4.193 17 C -0.092 4.092 18 N -0.167 5.167 19 N -0.110 5.110 20 N -0.091 5.091 21 N -0.097 5.097 22 C -0.080 4.080 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.002 0.998 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.213 10.510 -15.492 20.443 hybrid contribution -0.159 0.167 0.726 0.762 sum -8.372 10.677 -14.766 20.053 Atomic orbital electron populations 1.22468 0.96460 1.01585 1.02728 1.21582 0.92129 0.97599 0.89441 0.90066 1.19015 0.95168 0.94062 0.91999 1.21585 0.93418 1.31765 1.05966 0.91773 1.25826 1.02431 0.96063 0.96119 1.70099 1.36785 1.38803 1.12972 0.85607 0.81358 0.77369 0.77944 1.18676 1.20800 1.21775 1.60448 1.59167 1.08530 1.02115 1.20157 1.00835 0.91658 0.80742 0.87935 1.21813 0.95096 0.99359 1.03028 1.26415 0.92649 0.95403 0.94714 1.75068 1.22459 1.11320 1.07859 1.78638 1.09108 1.19592 1.03674 1.78713 1.15711 0.97739 1.16973 1.48837 1.30485 1.20604 1.09754 1.23058 0.93584 0.83104 1.08249 0.93785 0.91894 0.90576 0.99795 0.98392 0.93549 0.84616 0.90647 0.93832 0.90146 0.85762 0.85735 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.15 71.98 0.66 -3.97 16 2 C 0.10 3.53 2.34 44.91 0.11 3.63 16 3 H 0.08 2.65 7.11 -2.39 -0.02 2.64 16 4 C 0.04 1.74 4.65 29.85 0.14 1.88 16 5 C -0.49 -26.94 8.84 25.60 0.23 -26.72 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 8 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 9 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 10 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 13 N -0.67 -22.67 5.76 -473.32 -2.73 -25.40 16 14 C 0.18 4.38 2.81 44.17 0.12 4.51 16 15 H 0.10 1.62 5.82 -2.39 -0.01 1.61 16 16 C -0.13 -3.41 9.38 71.98 0.68 -2.73 16 17 C 0.19 5.04 6.62 138.14 0.91 5.95 16 18 N -0.32 -11.39 12.36 -50.45 -0.62 -12.01 16 19 N -0.12 -4.09 13.43 37.01 0.50 -3.59 16 20 N -0.10 -2.95 13.29 37.02 0.49 -2.46 16 21 N -0.29 -6.12 3.75 -359.64 -1.35 -7.47 16 22 C 0.06 0.39 11.21 127.77 1.43 1.82 16 23 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.40 7.43 -2.39 -0.02 1.38 16 26 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.34 11.66 8.09 -89.69 -0.73 10.93 16 30 H 0.07 1.98 7.43 -2.38 -0.02 1.96 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.13 0.26 7.01 -2.39 -0.02 0.24 16 Total: -1.00 -75.98 297.25 3.70 -72.28 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.36 Total: 4.45 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.74 Total: -15.70 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.43 Total: -108.90 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.98 3.70 -72.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460896994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.328 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds