Wall clock time and date at job start Sun Mar 29 2020 22:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99850 * 2 1 4 4 C 1.53000 * 109.47274 * 125.00110 * 3 2 1 5 5 O 1.42902 * 112.94276 * 53.40821 * 4 3 2 6 6 C 1.53951 * 113.74033 * 281.67616 * 4 3 2 7 7 N 1.47582 * 86.11174 * 222.04541 * 6 4 3 8 8 C 1.34781 * 134.48573 * 204.63728 * 7 6 4 9 9 O 1.21284 * 119.99548 * 180.02562 * 8 7 6 10 10 C 1.50696 * 120.00530 * 0.02562 * 8 7 6 11 11 H 1.09000 * 109.47214 * 59.99767 * 10 8 7 12 12 C 1.53004 * 109.46840 * 300.00064 * 10 8 7 13 13 C 1.50701 * 109.47370 * 179.97438 * 10 8 7 14 14 H 1.08002 * 119.99704 * 5.46598 * 13 10 8 15 15 C 1.37878 * 119.99926 * 185.46029 * 13 10 8 16 16 N 1.31512 * 119.99868 * 9.66127 * 15 13 10 17 17 Si 1.86803 * 119.99680 * 189.66056 * 15 13 10 18 18 H 1.48497 * 109.47283 * 84.99812 * 17 15 13 19 19 H 1.48506 * 109.46633 * 204.99764 * 17 15 13 20 20 H 1.48495 * 109.47038 * 324.99475 * 17 15 13 21 21 C 1.47575 * 91.01816 * 24.64089 * 7 6 4 22 22 H 1.07998 * 120.00284 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.99798 * 179.72675 * 1 2 3 24 24 H 1.08000 * 120.00305 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46857 * 245.00333 * 3 2 1 26 26 H 1.08999 * 109.47095 * 5.00370 * 3 2 1 27 27 H 0.96700 * 114.00136 * 309.66380 * 5 4 3 28 28 H 1.09000 * 113.76706 * 336.34720 * 6 4 3 29 29 H 1.08997 * 113.76879 * 107.74798 * 6 4 3 30 30 H 1.09008 * 109.46846 * 184.27430 * 12 10 8 31 31 H 1.08996 * 109.47032 * 304.27067 * 12 10 8 32 32 H 1.09002 * 109.47172 * 64.27654 * 12 10 8 33 33 H 0.97000 * 119.99911 * 179.97438 * 16 15 13 34 34 H 1.08997 * 113.77188 * 221.05821 * 21 7 6 35 35 H 1.09002 * 113.87083 * 89.67256 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.8984 0.1951 1.2200 6 6 2.3623 1.6496 2.5297 7 7 3.5284 2.5146 2.7943 8 6 4.1303 2.9736 3.9095 9 8 5.1034 3.6921 3.8214 10 6 3.5941 2.5942 5.2658 11 1 3.6235 1.5103 5.3778 12 6 2.1499 3.0816 5.3978 13 6 4.4403 3.2325 6.3370 14 1 5.2267 3.9210 6.0652 15 6 4.2103 2.9376 7.6641 16 7 3.3882 1.9637 7.9884 17 14 5.0667 3.9214 9.0014 18 1 4.2865 5.1522 9.2870 19 1 5.1643 3.0998 10.2347 20 1 6.4300 4.2940 8.5457 21 6 3.7707 2.6752 1.3474 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0045 24 1 1.8500 -0.9353 0.0004 25 1 2.6212 1.4026 -0.9314 26 1 1.3585 2.1316 0.0896 27 1 3.4369 -0.6514 1.1457 28 1 1.4233 2.1949 2.4349 29 1 2.2917 0.7912 3.1976 30 1 1.7872 2.8748 6.4048 31 1 2.1101 4.1547 5.2107 32 1 1.5234 2.5627 4.6723 33 1 3.2267 1.7560 8.9221 34 1 4.8244 2.6356 1.0713 35 1 3.2463 3.5215 0.9036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522134277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:30 Heat of formation + Delta-G solvation = -33.532728 kcal Electronic energy + Delta-G solvation = -17350.980451 eV Core-core repulsion = 14543.897921 eV Total energy + Delta-G solvation = -2807.082530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26429 -37.72606 -35.13108 -34.37452 -33.64552 -30.78332 -29.25117 -26.23542 -26.07870 -25.04547 -22.31250 -20.49539 -19.91460 -18.44620 -16.97959 -16.28939 -15.87830 -15.75938 -14.95532 -14.76490 -14.41234 -14.00325 -13.41808 -12.90994 -12.83214 -12.75529 -12.50269 -12.04476 -11.78715 -11.53991 -11.45561 -10.98416 -10.84262 -10.61322 -10.60277 -10.26610 -10.06157 -9.91090 -9.50556 -8.98563 -8.45269 -8.32616 -8.06778 -6.02588 -4.01016 2.01539 3.37193 3.40335 3.42545 3.51435 3.73938 3.95147 4.33080 4.49974 4.58133 4.91889 4.93456 5.17268 5.32695 5.48823 5.51915 5.62773 5.64747 5.72391 5.78715 5.96808 6.00890 6.35618 6.49370 6.51919 6.62630 6.86337 6.92506 7.49399 7.59822 7.68175 8.01444 8.21113 8.51349 9.07584 9.27663 9.62668 11.08142 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041006 B = 0.005708 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.663354 B = 4904.168168 C = 5226.944036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C -0.111 4.111 4 C 0.099 3.901 5 O -0.531 6.531 6 C 0.087 3.913 7 N -0.646 5.646 8 C 0.545 3.455 9 O -0.544 6.544 10 C 0.035 3.965 11 H 0.058 0.942 12 C -0.125 4.125 13 C -0.503 4.503 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.113 3.887 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.376 0.624 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -4.670 -15.585 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C -0.149 4.149 4 C 0.057 3.943 5 O -0.336 6.336 6 C -0.037 4.037 7 N -0.384 5.384 8 C 0.339 3.661 9 O -0.420 6.420 10 C 0.014 3.986 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.541 4.541 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.010 4.010 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.128 0.872 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.224 0.776 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.921 -3.812 -15.177 17.111 hybrid contribution -0.185 -0.035 0.705 0.730 sum -7.106 -3.847 -14.472 16.576 Atomic orbital electron populations 1.23884 0.95850 1.02061 1.00322 1.22837 0.96163 0.98207 1.00750 1.21282 0.98231 0.96514 0.98917 1.22802 0.90353 0.88039 0.93126 1.86582 1.35424 1.15510 1.96127 1.23735 0.90511 0.94457 0.95037 1.50086 1.31081 1.52491 1.04778 1.21787 0.81992 0.77232 0.85130 1.90538 1.27335 1.37391 1.86686 1.18812 0.94076 0.99031 0.86662 0.92461 1.21684 0.96421 0.98404 1.01811 1.21117 1.16981 1.26393 0.89643 0.90833 1.24944 0.95570 0.94893 0.98643 1.69967 1.37408 1.28241 1.17805 0.86509 0.80216 0.80023 0.80747 1.20553 1.21364 1.19750 1.23069 1.01693 0.93648 0.82627 0.88404 0.88382 0.87208 0.89736 0.89853 0.77583 0.89745 0.89673 0.90624 0.95027 0.96294 0.92974 0.89881 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 14.32 29.02 0.42 -0.92 16 2 C -0.16 -1.23 8.89 -36.02 -0.32 -1.56 16 3 C -0.11 -0.96 5.32 -27.88 -0.15 -1.10 16 4 C 0.10 1.21 1.48 -89.69 -0.13 1.08 16 5 O -0.53 -7.03 13.49 -35.23 -0.48 -7.51 16 6 C 0.09 1.26 6.25 -2.97 -0.02 1.24 16 7 N -0.65 -12.51 3.57 -178.27 -0.64 -13.15 16 8 C 0.55 13.61 7.38 -10.99 -0.08 13.52 16 9 O -0.54 -15.44 16.20 5.55 0.09 -15.35 16 10 C 0.04 0.93 2.33 -92.92 -0.22 0.71 16 11 H 0.06 1.60 8.08 -51.93 -0.42 1.18 16 12 C -0.13 -2.93 8.90 37.16 0.33 -2.60 16 13 C -0.50 -14.88 8.29 -34.44 -0.29 -15.16 16 14 H 0.07 2.30 6.79 -52.49 -0.36 1.94 16 15 C 0.06 1.73 5.16 -17.82 -0.09 1.64 16 16 N -0.90 -25.95 12.17 55.43 0.67 -25.27 16 17 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.11 1.71 8.24 -2.98 -0.02 1.68 16 22 H 0.10 0.67 7.84 -52.49 -0.41 0.25 16 23 H 0.10 0.62 8.06 -52.49 -0.42 0.19 16 24 H 0.11 0.71 7.00 -52.49 -0.37 0.35 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 27 H 0.38 3.38 7.34 45.56 0.33 3.71 16 28 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.92 6.82 -51.92 -0.35 1.56 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.36 6.31 -51.93 -0.33 0.04 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -34.57 295.66 -5.87 -40.44 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.38 Total: 0.53 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.57 Total: -1.46 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.04 Total: -38.42 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.39 Total: -22.85 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.57 -5.87 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522134277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.903 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds