Wall clock time and date at job start Sun Mar 29 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99850 * 2 1 4 4 C 1.53000 * 109.47274 * 125.00110 * 3 2 1 5 5 O 1.42902 * 112.94276 * 53.40821 * 4 3 2 6 6 C 1.53951 * 113.74033 * 281.67616 * 4 3 2 7 7 N 1.47582 * 86.11174 * 222.04541 * 6 4 3 8 8 C 1.34781 * 134.48573 * 204.63728 * 7 6 4 9 9 O 1.21284 * 119.99548 * 180.02562 * 8 7 6 10 10 C 1.50696 * 120.00530 * 0.02562 * 8 7 6 11 11 H 1.09000 * 109.47214 * 59.99767 * 10 8 7 12 12 C 1.53004 * 109.46840 * 300.00064 * 10 8 7 13 13 C 1.50701 * 109.47370 * 179.97438 * 10 8 7 14 14 H 1.08002 * 119.99704 * 5.46598 * 13 10 8 15 15 C 1.37878 * 119.99926 * 185.46029 * 13 10 8 16 16 N 1.31512 * 119.99868 * 9.66127 * 15 13 10 17 17 Si 1.86803 * 119.99680 * 189.66056 * 15 13 10 18 18 H 1.48497 * 109.47283 * 84.99812 * 17 15 13 19 19 H 1.48506 * 109.46633 * 204.99764 * 17 15 13 20 20 H 1.48495 * 109.47038 * 324.99475 * 17 15 13 21 21 C 1.47575 * 91.01816 * 24.64089 * 7 6 4 22 22 H 1.07998 * 120.00284 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.99798 * 179.72675 * 1 2 3 24 24 H 1.08000 * 120.00305 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46857 * 245.00333 * 3 2 1 26 26 H 1.08999 * 109.47095 * 5.00370 * 3 2 1 27 27 H 0.96700 * 114.00136 * 309.66380 * 5 4 3 28 28 H 1.09000 * 113.76706 * 336.34720 * 6 4 3 29 29 H 1.08997 * 113.76879 * 107.74798 * 6 4 3 30 30 H 1.09008 * 109.46846 * 184.27430 * 12 10 8 31 31 H 1.08996 * 109.47032 * 304.27067 * 12 10 8 32 32 H 1.09002 * 109.47172 * 64.27654 * 12 10 8 33 33 H 0.97000 * 119.99911 * 179.97438 * 16 15 13 34 34 H 1.08997 * 113.77188 * 221.05821 * 21 7 6 35 35 H 1.09002 * 113.87083 * 89.67256 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.8984 0.1951 1.2200 6 6 2.3623 1.6496 2.5297 7 7 3.5284 2.5146 2.7943 8 6 4.1303 2.9736 3.9095 9 8 5.1034 3.6921 3.8214 10 6 3.5941 2.5942 5.2658 11 1 3.6235 1.5103 5.3778 12 6 2.1499 3.0816 5.3978 13 6 4.4403 3.2325 6.3370 14 1 5.2267 3.9210 6.0652 15 6 4.2103 2.9376 7.6641 16 7 3.3882 1.9637 7.9884 17 14 5.0667 3.9214 9.0014 18 1 4.2865 5.1522 9.2870 19 1 5.1643 3.0998 10.2347 20 1 6.4300 4.2940 8.5457 21 6 3.7707 2.6752 1.3474 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0045 24 1 1.8500 -0.9353 0.0004 25 1 2.6212 1.4026 -0.9314 26 1 1.3585 2.1316 0.0896 27 1 3.4369 -0.6514 1.1457 28 1 1.4233 2.1949 2.4349 29 1 2.2917 0.7912 3.1976 30 1 1.7872 2.8748 6.4048 31 1 2.1101 4.1547 5.2107 32 1 1.5234 2.5627 4.6723 33 1 3.2267 1.7560 8.9221 34 1 4.8244 2.6356 1.0713 35 1 3.2463 3.5215 0.9036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522134277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:29 Heat of formation + Delta-G solvation = -59.536952 kcal Electronic energy + Delta-G solvation = -17352.108079 eV Core-core repulsion = 14543.897921 eV Total energy + Delta-G solvation = -2808.210158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.57552 -39.41267 -36.35683 -35.76606 -35.08756 -32.81008 -30.45174 -27.49498 -27.35082 -27.02911 -24.11590 -21.64519 -20.60211 -19.98647 -18.45494 -17.90595 -17.64570 -17.15970 -16.46482 -16.09880 -15.67076 -15.52788 -14.80811 -14.49403 -14.21221 -13.99183 -13.67164 -13.53914 -13.16391 -12.97504 -12.87463 -12.80643 -12.56269 -12.30299 -12.07653 -12.00725 -11.54860 -11.18039 -11.06700 -10.56742 -10.41689 -10.04483 -9.59212 -8.22397 -6.28700 1.38530 1.39405 1.46518 1.50807 1.85324 1.99337 2.42984 2.93960 3.09339 3.32263 3.72826 3.98567 4.13858 4.34241 4.41848 4.43709 4.55434 4.59823 4.67214 4.82019 4.84292 4.89601 4.91316 5.09184 5.10650 5.20574 5.44616 5.66096 5.81489 5.83426 5.94734 6.16160 6.71683 6.79807 6.83935 7.35717 7.44467 8.87454 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041006 B = 0.005708 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.663354 B = 4904.168168 C = 5226.944036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.173 4.173 3 C -0.098 4.098 4 C 0.121 3.879 5 O -0.555 6.555 6 C 0.079 3.921 7 N -0.653 5.653 8 C 0.538 3.462 9 O -0.596 6.596 10 C 0.033 3.967 11 H 0.034 0.966 12 C -0.109 4.109 13 C -0.535 4.535 14 H 0.045 0.955 15 C 0.022 3.978 16 N -0.912 5.912 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.273 1.273 20 H -0.280 1.280 21 C 0.102 3.898 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.394 0.606 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.065 0.935 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -5.037 -16.779 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.191 4.191 3 C -0.136 4.136 4 C 0.079 3.921 5 O -0.364 6.364 6 C -0.043 4.043 7 N -0.388 5.388 8 C 0.331 3.669 9 O -0.476 6.476 10 C 0.011 3.989 11 H 0.052 0.948 12 C -0.167 4.167 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.177 4.177 16 N -0.551 5.551 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.205 1.205 21 C -0.020 4.020 22 H 0.122 0.878 23 H 0.124 0.876 24 H 0.137 0.863 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.246 0.754 28 H 0.134 0.866 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.770 -4.234 -16.419 19.089 hybrid contribution 0.329 -0.014 0.988 1.041 sum -8.440 -4.247 -15.431 18.094 Atomic orbital electron populations 1.24063 0.95816 1.02824 0.99107 1.22874 0.96377 0.98105 1.01749 1.21185 0.97523 0.97754 0.97144 1.22563 0.89688 0.86375 0.93455 1.86540 1.36805 1.16846 1.96182 1.24170 0.90278 0.93738 0.96128 1.50066 1.31961 1.51433 1.05364 1.21386 0.81888 0.77318 0.86339 1.90491 1.29510 1.39966 1.87673 1.18703 0.95396 0.97228 0.87529 0.94780 1.21478 0.95056 0.98557 1.01606 1.21241 1.17567 1.27015 0.91493 0.93626 1.25624 0.96208 0.95600 1.00300 1.70029 1.37821 1.28641 1.18569 0.85604 0.78781 0.79140 0.78352 1.19356 1.19800 1.20539 1.23513 1.01780 0.97012 0.79677 0.87832 0.87595 0.86328 0.88654 0.88329 0.75424 0.86646 0.90344 0.92750 0.95200 0.92518 0.92436 0.91690 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 14.32 67.78 0.97 -1.00 16 2 C -0.17 -2.03 8.89 25.65 0.23 -1.80 16 3 C -0.10 -1.31 5.32 29.85 0.16 -1.15 16 4 C 0.12 2.67 1.48 -10.13 -0.02 2.66 16 5 O -0.55 -13.78 13.49 -148.98 -2.01 -15.79 16 6 C 0.08 2.12 6.25 86.48 0.54 2.66 16 7 N -0.65 -24.91 3.57 -840.15 -3.00 -27.91 16 8 C 0.54 27.56 7.38 87.66 0.65 28.20 16 9 O -0.60 -35.30 16.20 -3.04 -0.05 -35.35 16 10 C 0.03 1.76 2.33 -12.29 -0.03 1.73 16 11 H 0.03 1.98 8.08 -2.39 -0.02 1.96 16 12 C -0.11 -5.09 8.90 71.98 0.64 -4.45 16 13 C -0.53 -32.75 8.29 25.60 0.21 -32.54 16 14 H 0.05 3.00 6.79 -2.91 -0.02 2.98 16 15 C 0.02 1.29 5.16 84.66 0.44 1.73 16 16 N -0.91 -53.19 12.17 21.45 0.26 -52.92 16 17 Si 0.96 46.25 29.55 68.60 2.03 48.27 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 21 C 0.10 2.93 8.24 86.48 0.71 3.64 16 22 H 0.10 1.00 7.84 -2.91 -0.02 0.98 16 23 H 0.11 0.99 8.06 -2.91 -0.02 0.96 16 24 H 0.12 1.15 7.00 -2.91 -0.02 1.13 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.06 7.70 -2.39 -0.02 1.04 16 27 H 0.39 6.25 7.34 -74.06 -0.54 5.70 16 28 H 0.12 2.43 7.92 -2.39 -0.02 2.41 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.05 2.75 6.82 -2.38 -0.02 2.74 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 2.14 6.31 -2.39 -0.02 2.13 16 33 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.12 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -77.60 295.66 2.27 -75.32 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.54 Total: 8.69 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 4.50 Total: -0.31 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -2.74 Total: -80.84 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -2.06 Total: -51.14 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -77.60 2.27 -75.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522134277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.787 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds