Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37099 * 119.99647 * 2 1 4 4 H 1.08002 * 119.99764 * 204.39140 * 3 2 1 5 5 C 1.38949 * 120.00437 * 24.39483 * 3 2 1 6 6 N 1.31418 * 119.99425 * 12.65432 * 5 3 2 7 7 Si 1.86796 * 120.00481 * 192.65580 * 5 3 2 8 8 H 1.48499 * 109.46747 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47376 * 119.99629 * 7 5 3 10 10 H 1.48499 * 109.47084 * 240.00323 * 7 5 3 11 11 C 1.34775 * 120.00357 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00122 * 180.02562 * 11 2 1 13 13 C 1.50705 * 119.99755 * 359.97438 * 11 2 1 14 14 C 1.52997 * 109.46896 * 180.02562 * 13 11 2 15 15 C 1.53008 * 109.47009 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47161 * 179.97438 * 15 14 13 17 17 O 1.20765 * 119.99671 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00196 * 179.97438 * 16 15 14 19 19 C 1.52998 * 117.50111 * 223.74982 * 18 16 15 20 20 C 1.52999 * 117.50222 * 155.08472 * 18 16 15 21 21 H 1.08997 * 109.47430 * 265.85918 * 1 2 3 22 22 H 1.08994 * 109.47432 * 25.86303 * 1 2 3 23 23 H 1.09006 * 109.47305 * 145.86649 * 1 2 3 24 24 H 0.97004 * 119.99610 * 179.97438 * 6 5 3 25 25 H 1.08997 * 109.47138 * 60.00174 * 13 11 2 26 26 H 1.08999 * 109.46905 * 300.00149 * 13 11 2 27 27 H 1.08997 * 109.47282 * 60.00021 * 14 13 11 28 28 H 1.08999 * 109.47268 * 299.99684 * 14 13 11 29 29 H 1.08996 * 109.46718 * 59.99751 * 15 14 13 30 30 H 1.08999 * 109.46694 * 299.99847 * 15 14 13 31 31 H 1.09001 * 115.55094 * 9.42007 * 18 16 15 32 32 H 1.09002 * 117.50194 * 359.97438 * 19 18 16 33 33 H 1.08999 * 117.50082 * 145.02051 * 19 18 16 34 34 H 1.08999 * 117.50127 * 214.97806 * 20 18 16 35 35 H 1.09001 * 117.49654 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2490 1.1884 7 14 2.3233 4.0074 0.1823 8 1 3.5642 3.8352 -0.6150 9 1 1.3680 4.8629 -0.5664 10 1 2.6539 4.6518 1.4787 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 6 1.6147 -4.9603 -0.0012 16 6 2.5940 -6.1057 -0.0018 17 8 3.7813 -5.8849 -0.0022 18 6 2.0918 -7.5265 -0.0019 19 6 2.7810 -8.5195 0.9360 20 6 3.0166 -8.6026 -0.5742 21 1 -0.3634 -0.0742 1.0249 22 1 -0.3634 0.9247 -0.4483 23 1 -0.3634 -0.8507 -0.5767 24 1 0.0147 3.0516 1.5357 25 1 0.7584 -2.5299 -0.8903 26 1 0.7591 -2.5302 0.8897 27 1 3.0063 -3.5774 0.8894 28 1 3.0063 -3.5774 -0.8905 29 1 0.9884 -5.0177 -0.8913 30 1 0.9878 -5.0182 0.8886 31 1 1.0204 -7.6464 -0.1625 32 1 3.5980 -8.1453 1.5530 33 1 2.1631 -9.2929 1.3922 34 1 2.5535 -9.4307 -1.1109 35 1 3.9881 -8.2829 -0.9511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542522933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = -54.030935 kcal Electronic energy + Delta-G solvation = -16547.512044 eV Core-core repulsion = 13739.540645 eV Total energy + Delta-G solvation = -2807.971399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93206 -38.40022 -36.28891 -34.78617 -33.67269 -31.54983 -28.89315 -26.25971 -25.09730 -23.79516 -22.69951 -21.26233 -19.33282 -18.60773 -16.83855 -16.66908 -15.92386 -15.65725 -15.17232 -14.71589 -14.39684 -14.24193 -13.84578 -13.16657 -12.87670 -12.30754 -12.01372 -11.79986 -11.77169 -11.45204 -11.23462 -11.13962 -10.96502 -10.86786 -10.77133 -10.72700 -10.35993 -10.28051 -10.14567 -9.53837 -8.96714 -8.29344 -7.59238 -6.27405 -3.83047 1.87068 3.18391 3.28300 3.35829 3.62406 3.80763 3.98735 4.19763 4.53578 4.66462 4.81508 4.92188 5.09844 5.16201 5.29299 5.33023 5.36605 5.52668 5.69764 5.79988 5.83759 5.86310 5.89367 6.07085 6.20090 6.46496 6.59415 6.81404 6.89533 7.22980 7.57805 7.61926 8.21609 8.55837 9.25961 9.49781 10.07200 10.77926 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.067454 B = 0.003988 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.997519 B = 7018.652961 C = 7280.204018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.452 5.452 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.446 3.554 12 O -0.588 6.588 13 C -0.129 4.129 14 C -0.091 4.091 15 C -0.165 4.165 16 C 0.380 3.620 17 O -0.449 6.449 18 C -0.222 4.222 19 C -0.152 4.152 20 C -0.155 4.155 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.025 0.975 24 H 0.266 0.734 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -16.872 -2.042 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.234 3.766 12 O -0.473 6.473 13 C -0.170 4.170 14 C -0.129 4.129 15 C -0.202 4.202 16 C 0.256 3.744 17 O -0.323 6.323 18 C -0.241 4.241 19 C -0.189 4.189 20 C -0.192 4.192 21 H 0.069 0.931 22 H 0.091 0.909 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.162 -16.584 -1.955 16.995 hybrid contribution -0.225 0.916 0.002 0.944 sum -3.387 -15.667 -1.954 16.148 Atomic orbital electron populations 1.21445 0.81382 0.99775 1.00450 1.43610 1.05404 1.04856 1.63237 1.19702 1.00556 0.84305 1.38716 0.88516 1.25336 0.96688 1.00090 0.95295 1.70007 1.19382 1.29371 1.33705 0.85884 0.79179 0.81585 0.78192 1.19250 1.20717 1.20791 1.20151 0.88130 0.85002 0.83280 1.90523 1.14112 1.87247 1.55399 1.21537 0.98750 0.94139 1.02529 1.21096 0.97228 0.90213 1.04375 1.22115 0.99165 0.94592 1.04365 1.23871 0.89778 0.90312 0.70478 1.90418 1.19294 1.87068 1.35474 1.22937 1.00351 0.91802 1.08997 1.22939 1.02609 1.00071 0.93306 1.22958 1.00784 0.99082 0.96398 0.93148 0.90866 0.95634 0.92427 0.90640 0.90407 0.90986 0.91060 0.88512 0.88418 0.85771 0.88085 0.87897 0.88009 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.55 8.44 59.84 0.51 3.06 16 2 N -0.45 -11.92 3.01 -122.20 -0.37 -12.29 16 3 C -0.30 -8.78 9.24 -14.93 -0.14 -8.92 16 4 H 0.10 2.93 7.45 -52.49 -0.39 2.54 16 5 C 0.03 0.77 5.04 -17.47 -0.09 0.68 16 6 N -0.88 -24.08 10.83 55.50 0.60 -23.48 16 7 Si 0.92 21.24 29.57 -169.99 -5.03 16.22 16 8 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.45 11.23 7.63 -10.98 -0.08 11.14 16 12 O -0.59 -17.07 15.70 5.55 0.09 -16.99 16 13 C -0.13 -2.35 4.31 -27.88 -0.12 -2.47 16 14 C -0.09 -1.56 3.79 -26.73 -0.10 -1.66 16 15 C -0.17 -1.96 5.64 -27.88 -0.16 -2.12 16 16 C 0.38 4.85 6.92 -29.04 -0.20 4.65 16 17 O -0.45 -7.57 16.05 5.99 0.10 -7.47 16 18 C -0.22 -2.05 6.12 -91.78 -0.56 -2.61 16 19 C -0.15 -1.29 10.14 -26.69 -0.27 -1.56 16 20 C -0.16 -1.34 10.05 -26.69 -0.27 -1.61 16 21 H 0.05 1.16 7.83 -51.93 -0.41 0.75 16 22 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 23 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 24 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.08 1.19 7.41 -51.93 -0.38 0.81 16 26 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 27 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 28 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -33.82 299.18 -6.80 -40.62 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.22 Total: 0.30 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.48 Total: -1.42 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.23 Total: -35.76 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.18 Total: -24.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.82 -6.80 -40.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542522933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.410 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds