Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37099 * 119.99647 * 2 1 4 4 H 1.08002 * 119.99764 * 204.39140 * 3 2 1 5 5 C 1.38949 * 120.00437 * 24.39483 * 3 2 1 6 6 N 1.31418 * 119.99425 * 12.65432 * 5 3 2 7 7 Si 1.86796 * 120.00481 * 192.65580 * 5 3 2 8 8 H 1.48499 * 109.46747 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47376 * 119.99629 * 7 5 3 10 10 H 1.48499 * 109.47084 * 240.00323 * 7 5 3 11 11 C 1.34775 * 120.00357 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00122 * 180.02562 * 11 2 1 13 13 C 1.50705 * 119.99755 * 359.97438 * 11 2 1 14 14 C 1.52997 * 109.46896 * 180.02562 * 13 11 2 15 15 C 1.53008 * 109.47009 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47161 * 179.97438 * 15 14 13 17 17 O 1.20765 * 119.99671 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00196 * 179.97438 * 16 15 14 19 19 C 1.52998 * 117.50111 * 223.74982 * 18 16 15 20 20 C 1.52999 * 117.50222 * 155.08472 * 18 16 15 21 21 H 1.08997 * 109.47430 * 265.85918 * 1 2 3 22 22 H 1.08994 * 109.47432 * 25.86303 * 1 2 3 23 23 H 1.09006 * 109.47305 * 145.86649 * 1 2 3 24 24 H 0.97004 * 119.99610 * 179.97438 * 6 5 3 25 25 H 1.08997 * 109.47138 * 60.00174 * 13 11 2 26 26 H 1.08999 * 109.46905 * 300.00149 * 13 11 2 27 27 H 1.08997 * 109.47282 * 60.00021 * 14 13 11 28 28 H 1.08999 * 109.47268 * 299.99684 * 14 13 11 29 29 H 1.08996 * 109.46718 * 59.99751 * 15 14 13 30 30 H 1.08999 * 109.46694 * 299.99847 * 15 14 13 31 31 H 1.09001 * 115.55094 * 9.42007 * 18 16 15 32 32 H 1.09002 * 117.50194 * 359.97438 * 19 18 16 33 33 H 1.08999 * 117.50082 * 145.02051 * 19 18 16 34 34 H 1.08999 * 117.50127 * 214.97806 * 20 18 16 35 35 H 1.09001 * 117.49654 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2490 1.1884 7 14 2.3233 4.0074 0.1823 8 1 3.5642 3.8352 -0.6150 9 1 1.3680 4.8629 -0.5664 10 1 2.6539 4.6518 1.4787 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 6 1.6147 -4.9603 -0.0012 16 6 2.5940 -6.1057 -0.0018 17 8 3.7813 -5.8849 -0.0022 18 6 2.0918 -7.5265 -0.0019 19 6 2.7810 -8.5195 0.9360 20 6 3.0166 -8.6026 -0.5742 21 1 -0.3634 -0.0742 1.0249 22 1 -0.3634 0.9247 -0.4483 23 1 -0.3634 -0.8507 -0.5767 24 1 0.0147 3.0516 1.5357 25 1 0.7584 -2.5299 -0.8903 26 1 0.7591 -2.5302 0.8897 27 1 3.0063 -3.5774 0.8894 28 1 3.0063 -3.5774 -0.8905 29 1 0.9884 -5.0177 -0.8913 30 1 0.9878 -5.0182 0.8886 31 1 1.0204 -7.6464 -0.1625 32 1 3.5980 -8.1453 1.5530 33 1 2.1631 -9.2929 1.3922 34 1 2.5535 -9.4307 -1.1109 35 1 3.9881 -8.2829 -0.9511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542522933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = -75.893538 kcal Electronic energy + Delta-G solvation = -16548.460077 eV Core-core repulsion = 13739.540645 eV Total energy + Delta-G solvation = -2808.919432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96298 -40.29886 -37.10609 -36.72991 -35.13078 -33.61472 -30.24142 -28.12644 -26.68484 -25.28678 -23.33755 -22.52778 -20.54498 -20.10857 -18.88026 -17.86971 -17.52719 -16.97475 -16.57028 -16.06199 -15.86772 -15.84188 -15.25564 -14.66170 -14.24479 -13.71987 -13.56642 -13.33606 -13.17118 -12.92387 -12.74683 -12.64077 -12.45543 -12.39445 -12.14234 -12.12345 -11.67593 -11.53037 -11.42331 -11.01281 -10.58066 -10.27929 -9.65402 -8.35185 -6.00037 0.93297 1.34545 1.39068 1.53225 2.05519 2.27717 2.87949 2.94554 3.07845 3.21860 3.82932 3.92559 3.99198 4.12335 4.13048 4.23165 4.31543 4.56282 4.69831 4.72182 4.72751 4.83522 4.89935 5.01104 5.05534 5.12822 5.20170 5.22892 5.39955 5.42754 5.43728 6.11360 6.50240 6.64114 7.18002 7.49206 8.06560 8.68023 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.067454 B = 0.003988 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.997519 B = 7018.652961 C = 7280.204018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.467 5.467 3 C -0.349 4.349 4 H 0.064 0.936 5 C -0.002 4.002 6 N -0.895 5.895 7 Si 0.988 3.012 8 H -0.277 1.277 9 H -0.261 1.261 10 H -0.275 1.275 11 C 0.428 3.572 12 O -0.643 6.643 13 C -0.114 4.114 14 C -0.086 4.086 15 C -0.156 4.156 16 C 0.376 3.624 17 O -0.507 6.507 18 C -0.221 4.221 19 C -0.150 4.150 20 C -0.158 4.158 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.274 0.726 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 -18.122 -2.208 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.186 5.186 3 C -0.477 4.477 4 H 0.082 0.918 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.812 3.188 8 H -0.202 1.202 9 H -0.186 1.186 10 H -0.201 1.201 11 C 0.218 3.782 12 O -0.531 6.531 13 C -0.153 4.153 14 C -0.124 4.124 15 C -0.192 4.192 16 C 0.255 3.745 17 O -0.384 6.384 18 C -0.240 4.240 19 C -0.187 4.187 20 C -0.194 4.194 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.131 0.869 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.179 0.821 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.153 -17.846 -2.115 18.995 hybrid contribution 0.701 1.313 0.081 1.491 sum -5.452 -16.533 -2.034 17.527 Atomic orbital electron populations 1.21460 0.79029 1.01012 1.00727 1.43926 1.06976 1.04621 1.63108 1.19624 1.00303 0.86588 1.41182 0.91788 1.26067 0.97091 1.02856 0.94340 1.70061 1.19654 1.30686 1.32994 0.84964 0.78313 0.77330 0.78230 1.20196 1.18603 1.20082 1.21453 0.88068 0.87008 0.81654 1.90483 1.16859 1.88317 1.57437 1.21519 0.98533 0.89876 1.05385 1.20966 0.96995 0.93263 1.01197 1.22125 0.98772 0.90778 1.07567 1.24510 0.89035 0.92516 0.68412 1.90420 1.21598 1.88040 1.38342 1.23001 1.02152 0.89256 1.09579 1.23033 1.02293 1.00296 0.93058 1.23035 0.99876 0.99650 0.96883 0.93772 0.92665 0.90711 0.91660 0.86929 0.87719 0.94622 0.94167 0.84850 0.85218 0.82057 0.90263 0.84876 0.85116 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.23 8.44 127.77 1.08 6.31 16 2 N -0.47 -24.92 3.01 -658.90 -1.98 -26.90 16 3 C -0.35 -20.73 9.24 84.04 0.78 -19.96 16 4 H 0.06 4.12 7.45 -2.91 -0.02 4.10 16 5 C 0.00 -0.10 5.04 84.93 0.43 0.33 16 6 N -0.90 -48.19 10.83 21.66 0.23 -47.96 16 7 Si 0.99 43.71 29.57 68.60 2.03 45.74 16 8 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 C 0.43 21.90 7.63 87.66 0.67 22.57 16 12 O -0.64 -39.35 15.70 -3.07 -0.05 -39.40 16 13 C -0.11 -3.91 4.31 29.85 0.13 -3.78 16 14 C -0.09 -2.93 3.79 30.60 0.12 -2.81 16 15 C -0.16 -3.24 5.64 29.85 0.17 -3.07 16 16 C 0.38 9.15 6.92 29.10 0.20 9.35 16 17 O -0.51 -17.82 16.05 -1.46 -0.02 -17.84 16 18 C -0.22 -3.44 6.12 -11.54 -0.07 -3.51 16 19 C -0.15 -2.22 10.14 30.62 0.31 -1.90 16 20 C -0.16 -2.42 10.05 30.62 0.31 -2.11 16 21 H 0.04 1.95 7.83 -2.39 -0.02 1.93 16 22 H 0.05 2.57 6.80 -2.39 -0.02 2.55 16 23 H 0.07 2.46 6.61 -2.38 -0.02 2.45 16 24 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 25 H 0.11 3.08 7.41 -2.39 -0.02 3.06 16 26 H 0.10 3.10 8.11 -2.39 -0.02 3.08 16 27 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 28 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 29 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.61 7.89 -2.39 -0.02 1.59 16 Total: -1.00 -79.70 299.18 5.39 -74.31 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.07 Total: 10.64 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 4.11 Total: 1.41 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -1.75 Total: -74.86 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -0.07 Total: -57.24 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.70 5.39 -74.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542522933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.587 kcal (2) G-P(sol) polarization free energy of solvation -79.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds