Wall clock time and date at job start Sun Mar 29 2020 22:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00186 * 2 1 4 4 H 1.09008 * 110.67358 * 357.03456 * 3 2 1 5 5 O 1.44374 * 110.61998 * 234.07224 * 3 2 1 6 6 C 1.43742 * 106.97530 * 201.43763 * 5 3 2 7 7 C 1.54100 * 107.29730 * 26.51181 * 6 5 3 8 8 C 1.54817 * 104.18322 * 357.97103 * 7 6 5 9 9 H 1.09000 * 110.90852 * 97.35496 * 8 7 6 10 10 C 1.50701 * 110.90202 * 220.92027 * 8 7 6 11 11 O 1.21288 * 119.99455 * 118.55035 * 10 8 7 12 12 N 1.34776 * 120.00464 * 298.54220 * 10 8 7 13 13 C 1.46491 * 120.00056 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.47507 * 325.00144 * 13 12 10 15 15 C 1.52996 * 109.47168 * 85.00588 * 13 12 10 16 16 C 1.50702 * 109.46957 * 205.00172 * 13 12 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.07992 * 120.00319 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99583 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99719 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.87937 * 267.08261 * 6 5 3 28 28 H 1.09008 * 110.00615 * 146.00538 * 6 5 3 29 29 H 1.08997 * 110.48516 * 239.29818 * 7 6 5 30 30 H 1.08994 * 110.48970 * 116.64495 * 7 6 5 31 31 H 0.97003 * 119.99723 * 0.02562 * 12 10 8 32 32 H 1.09003 * 109.46851 * 299.99887 * 15 13 12 33 33 H 1.09003 * 109.47532 * 59.99962 * 15 13 12 34 34 H 1.09001 * 109.47094 * 179.97438 * 15 13 12 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3739 2.1476 -0.0528 5 8 3.0044 1.3489 -1.0942 6 6 4.0002 2.3277 -0.7525 7 6 4.0582 2.4046 0.7855 8 6 2.9646 1.4151 1.2563 9 1 3.3984 0.4480 1.5105 10 6 2.1948 1.9795 2.4225 11 8 1.0024 2.1778 2.3231 12 7 2.8313 2.2638 3.5760 13 6 2.0829 2.8119 4.7098 14 1 1.2968 3.4710 4.3417 15 6 1.4564 1.6673 5.5085 16 6 3.0172 3.5919 5.5984 17 1 4.0638 3.6718 5.3439 18 6 2.5348 4.2090 6.7332 19 7 1.2603 4.1121 7.0430 20 14 3.6914 5.1822 7.8306 21 1 5.0639 5.1384 7.2655 22 1 3.2324 6.5926 7.9060 23 1 3.6972 4.5900 9.1924 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 3.7213 3.2986 -1.1619 28 1 4.9709 2.0249 -1.1453 29 1 3.8307 3.4148 1.1258 30 1 5.0376 2.0908 1.1465 31 1 3.7851 2.1054 3.6554 32 1 0.7806 1.1030 4.8657 33 1 2.2425 1.0081 5.8767 34 1 0.8998 2.0751 6.3524 35 1 0.9209 4.5458 7.8415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:12 Heat of formation + Delta-G solvation = -71.137785 kcal Electronic energy + Delta-G solvation = -17371.803949 eV Core-core repulsion = 14563.090742 eV Total energy + Delta-G solvation = -2808.713208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06852 -38.06903 -34.85111 -33.67678 -32.68970 -31.87192 -28.99694 -28.16729 -25.28727 -23.57046 -22.19014 -20.77989 -19.89369 -19.34000 -17.51677 -16.14529 -16.11023 -15.43796 -15.41260 -14.86408 -14.17177 -13.73063 -13.50180 -13.44366 -13.02251 -12.46118 -12.30510 -11.84054 -11.60385 -11.41095 -11.13933 -10.99960 -10.91577 -10.78889 -10.70117 -10.32053 -10.26645 -9.71878 -9.31723 -9.06975 -8.96497 -8.58140 -7.93821 -6.15167 -4.24546 2.32437 3.21376 3.28984 3.31005 3.32839 3.86964 4.17504 4.35739 4.64522 4.73379 4.93708 5.12512 5.17321 5.24301 5.39055 5.47815 5.62411 5.70538 5.86043 5.88957 6.01095 6.11548 6.70238 6.78974 6.81285 6.94583 6.99330 7.12929 7.43027 7.53304 7.66700 7.88710 8.12340 8.63349 8.75046 9.08732 9.43250 10.90881 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035631 B = 0.005983 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.633033 B = 4678.726302 C = 5261.997664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C 0.126 3.874 4 H 0.087 0.913 5 O -0.374 6.374 6 C 0.049 3.951 7 C -0.148 4.148 8 C -0.139 4.139 9 H 0.106 0.894 10 C 0.512 3.488 11 O -0.549 6.549 12 N -0.706 5.706 13 C 0.264 3.736 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.388 0.612 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -5.381 -11.311 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.069 3.931 4 H 0.104 0.896 5 O -0.294 6.294 6 C -0.028 4.028 7 C -0.186 4.186 8 C -0.161 4.161 9 H 0.124 0.876 10 C 0.296 3.704 11 O -0.428 6.428 12 N -0.354 5.354 13 C 0.162 3.838 14 H 0.066 0.934 15 C -0.205 4.205 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.221 0.779 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.959 -5.277 -11.392 13.165 hybrid contribution 1.164 0.539 1.032 1.646 sum 5.123 -4.739 -10.361 12.492 Atomic orbital electron populations 1.23869 0.95759 1.02173 0.97576 1.22515 0.95707 0.96737 1.02154 1.21984 0.90470 0.97045 0.83588 0.89554 1.88877 1.38620 1.60360 1.41507 1.23116 0.92654 0.92762 0.94263 1.22950 0.99157 1.00592 0.95870 1.22907 0.96817 1.00824 0.95542 0.87616 1.19979 0.87825 0.78859 0.83706 1.90656 1.15009 1.54026 1.83132 1.46523 1.12069 1.63267 1.13512 1.18750 0.91970 0.91532 0.81535 0.93377 1.22074 0.99093 0.97864 1.01508 1.21253 0.95155 1.32655 1.08128 0.92054 1.24899 0.95267 0.96153 0.97436 1.69917 1.12854 1.43263 1.26034 0.86392 0.80726 0.79696 0.80269 1.19748 1.20865 1.20848 0.88182 0.87961 0.87134 0.92251 0.89748 0.89739 0.89670 0.77950 0.96637 0.95503 0.89174 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 14.33 29.01 0.42 -1.72 16 2 C -0.15 -2.18 9.24 -36.03 -0.33 -2.51 16 3 C 0.13 1.92 2.73 -26.83 -0.07 1.85 16 4 H 0.09 1.45 7.25 -51.92 -0.38 1.08 16 5 O -0.37 -5.41 11.21 -35.23 -0.39 -5.80 16 6 C 0.05 0.57 7.70 37.73 0.29 0.86 16 7 C -0.15 -1.82 6.55 -25.20 -0.16 -1.98 16 8 C -0.14 -2.07 2.94 -89.76 -0.26 -2.33 16 9 H 0.11 1.42 8.05 -51.93 -0.42 1.00 16 10 C 0.51 10.03 7.01 -10.99 -0.08 9.95 16 11 O -0.55 -12.78 15.46 5.55 0.09 -12.69 16 12 N -0.71 -14.46 5.02 -54.94 -0.28 -14.74 16 13 C 0.26 6.66 2.56 -69.09 -0.18 6.48 16 14 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 16 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.75 5.31 -17.82 -0.09 1.66 16 19 N -0.88 -24.79 11.33 55.43 0.63 -24.16 16 20 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 25 H 0.10 1.47 7.87 -52.49 -0.41 1.06 16 26 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -30.20 296.31 -6.12 -36.32 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.17 Total: 6.52 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.43 Total: -5.35 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.35 Total: -38.90 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.31 Total: -18.49 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.20 -6.12 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.818 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds