Wall clock time and date at job start Sun Mar 29 2020 22:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00186 * 2 1 4 4 H 1.09008 * 110.67358 * 357.03456 * 3 2 1 5 5 O 1.44374 * 110.61998 * 234.07224 * 3 2 1 6 6 C 1.43742 * 106.97530 * 201.43763 * 5 3 2 7 7 C 1.54100 * 107.29730 * 26.51181 * 6 5 3 8 8 C 1.54817 * 104.18322 * 357.97103 * 7 6 5 9 9 H 1.09000 * 110.90852 * 97.35496 * 8 7 6 10 10 C 1.50701 * 110.90202 * 220.92027 * 8 7 6 11 11 O 1.21288 * 119.99455 * 118.55035 * 10 8 7 12 12 N 1.34776 * 120.00464 * 298.54220 * 10 8 7 13 13 C 1.46491 * 120.00056 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.47507 * 325.00144 * 13 12 10 15 15 C 1.52996 * 109.47168 * 85.00588 * 13 12 10 16 16 C 1.50702 * 109.46957 * 205.00172 * 13 12 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.07992 * 120.00319 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99583 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99719 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.87937 * 267.08261 * 6 5 3 28 28 H 1.09008 * 110.00615 * 146.00538 * 6 5 3 29 29 H 1.08997 * 110.48516 * 239.29818 * 7 6 5 30 30 H 1.08994 * 110.48970 * 116.64495 * 7 6 5 31 31 H 0.97003 * 119.99723 * 0.02562 * 12 10 8 32 32 H 1.09003 * 109.46851 * 299.99887 * 15 13 12 33 33 H 1.09003 * 109.47532 * 59.99962 * 15 13 12 34 34 H 1.09001 * 109.47094 * 179.97438 * 15 13 12 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3739 2.1476 -0.0528 5 8 3.0044 1.3489 -1.0942 6 6 4.0002 2.3277 -0.7525 7 6 4.0582 2.4046 0.7855 8 6 2.9646 1.4151 1.2563 9 1 3.3984 0.4480 1.5105 10 6 2.1948 1.9795 2.4225 11 8 1.0024 2.1778 2.3231 12 7 2.8313 2.2638 3.5760 13 6 2.0829 2.8119 4.7098 14 1 1.2968 3.4710 4.3417 15 6 1.4564 1.6673 5.5085 16 6 3.0172 3.5919 5.5984 17 1 4.0638 3.6718 5.3439 18 6 2.5348 4.2090 6.7332 19 7 1.2603 4.1121 7.0430 20 14 3.6914 5.1822 7.8306 21 1 5.0639 5.1384 7.2655 22 1 3.2324 6.5926 7.9060 23 1 3.6972 4.5900 9.1924 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 3.7213 3.2986 -1.1619 28 1 4.9709 2.0249 -1.1453 29 1 3.8307 3.4148 1.1258 30 1 5.0376 2.0908 1.1465 31 1 3.7851 2.1054 3.6554 32 1 0.7806 1.1030 4.8657 33 1 2.2425 1.0081 5.8767 34 1 0.8998 2.0751 6.3524 35 1 0.9209 4.5458 7.8415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:12 Heat of formation + Delta-G solvation = -91.843475 kcal Electronic energy + Delta-G solvation = -17372.701815 eV Core-core repulsion = 14563.090742 eV Total energy + Delta-G solvation = -2809.611074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38956 -39.52416 -36.72150 -34.79504 -34.41620 -33.27994 -30.72491 -29.38104 -27.35299 -24.95764 -23.29594 -22.46179 -21.07051 -20.96018 -19.10591 -17.78810 -17.25445 -17.14950 -16.73545 -16.38035 -15.73637 -15.26464 -14.74622 -14.55300 -14.41876 -14.39075 -13.71761 -13.51729 -13.02110 -12.98709 -12.80869 -12.69002 -12.38351 -12.28606 -12.13179 -11.97483 -11.84382 -11.10068 -10.82643 -10.67372 -10.58016 -10.33236 -9.75619 -8.18468 -6.35943 1.23861 1.44177 1.45300 1.57190 1.76799 2.32015 2.53194 3.03914 3.12296 3.53190 3.59298 3.84806 4.08268 4.16490 4.27935 4.31760 4.43946 4.74561 4.76022 4.82603 4.89687 4.91645 5.00745 5.06666 5.09282 5.42697 5.59685 5.60981 5.68015 5.75866 5.89078 5.91818 6.09148 6.72364 6.94213 7.31569 7.53328 8.88142 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035631 B = 0.005983 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.633033 B = 4678.726302 C = 5261.997664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.164 4.164 3 C 0.126 3.874 4 H 0.059 0.941 5 O -0.382 6.382 6 C 0.045 3.955 7 C -0.142 4.142 8 C -0.129 4.129 9 H 0.131 0.869 10 C 0.510 3.490 11 O -0.592 6.592 12 N -0.701 5.701 13 C 0.270 3.730 14 H -0.002 1.002 15 C -0.134 4.134 16 C -0.545 4.545 17 H 0.075 0.925 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.973 3.027 21 H -0.258 1.258 22 H -0.285 1.285 23 H -0.279 1.279 24 H 0.125 0.875 25 H 0.085 0.915 26 H 0.133 0.867 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.405 0.595 32 H 0.011 0.989 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.588 -6.080 -11.727 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.068 3.932 4 H 0.077 0.923 5 O -0.302 6.302 6 C -0.032 4.032 7 C -0.180 4.180 8 C -0.151 4.151 9 H 0.149 0.851 10 C 0.296 3.704 11 O -0.473 6.473 12 N -0.350 5.350 13 C 0.167 3.833 14 H 0.016 0.984 15 C -0.192 4.192 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.211 1.211 23 H -0.205 1.205 24 H 0.143 0.857 25 H 0.103 0.897 26 H 0.150 0.850 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.240 0.760 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.622 -5.989 -11.836 14.826 hybrid contribution 0.297 0.774 1.102 1.379 sum 6.919 -5.215 -10.733 13.794 Atomic orbital electron populations 1.24031 0.95979 1.02590 0.97296 1.22729 0.95969 0.97099 1.02418 1.21861 0.90477 0.96738 0.84117 0.92343 1.88874 1.38944 1.61086 1.41255 1.23344 0.93391 0.92659 0.93756 1.22993 0.99613 0.99047 0.96379 1.22863 0.96975 1.02284 0.92967 0.85086 1.20784 0.87564 0.77694 0.84331 1.90641 1.17269 1.55556 1.83841 1.46251 1.12676 1.63231 1.12817 1.18338 0.91241 0.91028 0.82707 0.98436 1.21897 0.99097 0.97758 1.00499 1.21578 0.95776 1.32692 1.08236 0.90722 1.25819 0.96729 0.97150 0.98999 1.70066 1.14823 1.44217 1.26614 0.85283 0.79091 0.77683 0.78186 1.18202 1.21074 1.20488 0.85730 0.89703 0.84972 0.91962 0.86573 0.91213 0.86454 0.75981 0.96949 0.94036 0.91603 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 14.33 67.78 0.97 -3.41 16 2 C -0.16 -4.48 9.24 25.64 0.24 -4.25 16 3 C 0.13 3.73 2.73 30.53 0.08 3.81 16 4 H 0.06 2.04 7.25 -2.38 -0.02 2.02 16 5 O -0.38 -10.27 11.21 -148.98 -1.67 -11.94 16 6 C 0.04 0.91 7.70 72.35 0.56 1.47 16 7 C -0.14 -3.13 6.55 31.59 0.21 -2.92 16 8 C -0.13 -3.62 2.94 -10.24 -0.03 -3.65 16 9 H 0.13 3.06 8.05 -2.39 -0.02 3.04 16 10 C 0.51 19.91 7.01 87.66 0.61 20.52 16 11 O -0.59 -28.45 15.46 -3.05 -0.05 -28.50 16 12 N -0.70 -28.34 5.02 -446.12 -2.24 -30.58 16 13 C 0.27 13.88 2.56 44.25 0.11 14.00 16 14 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 15 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 16 C -0.54 -28.38 8.73 25.60 0.22 -28.16 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C 0.01 0.69 5.31 84.66 0.45 1.14 16 19 N -0.92 -52.54 11.33 21.45 0.24 -52.30 16 20 Si 0.97 41.46 29.54 68.60 2.03 43.48 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 25 H 0.08 2.55 7.87 -2.91 -0.02 2.53 16 26 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.07 1.75 7.85 -2.39 -0.02 1.73 16 30 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.41 13.58 8.54 -92.71 -0.79 12.79 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 3.66 6.08 -2.39 -0.01 3.64 16 35 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -66.58 296.31 2.69 -63.89 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.28 Total: 23.48 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 4.09 Total: -7.54 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.00 Total: -82.88 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.72 Total: -40.44 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -66.58 2.69 -63.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.949 kcal (2) G-P(sol) polarization free energy of solvation -66.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds