Wall clock time and date at job start Sun Mar 29 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00296 * 2 1 4 4 H 1.48496 * 109.46987 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47061 * 120.00139 * 3 2 1 6 6 H 1.48498 * 109.46877 * 239.99976 * 3 2 1 7 7 C 1.37885 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99895 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99924 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99842 * 179.97438 * 13 11 10 15 15 H 1.08993 * 110.54602 * 36.93634 * 14 13 11 16 16 C 1.54836 * 110.61262 * 159.97430 * 14 13 11 17 17 C 1.55854 * 103.51846 * 118.50546 * 16 14 13 18 18 H 1.08998 * 115.58052 * 158.89095 * 17 16 14 19 19 C 1.55855 * 105.03268 * 288.27010 * 17 16 14 20 20 C 1.54836 * 103.51796 * 71.72953 * 19 17 16 21 21 C 1.55846 * 110.61002 * 274.07202 * 14 13 11 22 22 H 1.09002 * 115.58474 * 82.60278 * 21 14 13 23 23 N 1.50647 * 101.02676 * 32.99276 * 17 16 14 24 24 H 0.96992 * 120.00308 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47262 * 300.00653 * 9 7 2 26 26 H 1.09004 * 109.46649 * 59.99991 * 9 7 2 27 27 H 0.97002 * 120.00196 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00278 * 359.97438 * 13 11 10 29 29 H 1.08995 * 110.61045 * 237.01189 * 16 14 13 30 30 H 1.09007 * 110.61373 * 359.97438 * 16 14 13 31 31 H 1.08993 * 110.61210 * 190.23289 * 19 17 16 32 32 H 1.08998 * 110.61371 * 313.22139 * 19 17 16 33 33 H 1.09004 * 110.61403 * 241.49576 * 20 19 17 34 34 H 1.08993 * 110.61451 * 118.50115 * 20 19 17 35 35 H 1.00901 * 110.99920 * 62.34444 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5581 -5.1055 -0.0011 13 7 2.6293 -5.9078 -0.0005 14 6 2.1409 -7.2890 -0.0005 15 1 1.2445 -7.3778 -0.6142 16 6 3.2431 -8.2570 -0.4962 17 6 3.4806 -9.1950 0.7256 18 1 3.9416 -10.1562 0.4984 19 6 4.2177 -8.3111 1.7766 20 6 3.1155 -7.3431 2.2722 21 6 1.8597 -7.7715 1.4545 22 1 0.8945 -7.4803 1.8687 23 7 2.0966 -9.2530 1.3177 24 1 -0.4850 -0.8400 -0.0004 25 1 0.6245 -2.5571 0.8896 26 1 0.6239 -2.5566 -0.8903 27 1 3.1566 -3.4355 -0.0009 28 1 3.5830 -5.7306 -0.0002 29 1 2.8937 -8.8281 -1.3563 30 1 4.1527 -7.7090 -0.7423 31 1 4.5896 -8.9223 2.5988 32 1 5.0323 -7.7579 1.3091 33 1 3.3837 -6.3102 2.0504 34 1 2.9411 -7.4747 3.3400 35 1 1.4428 -9.6653 0.6690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:35 Heat of formation + Delta-G solvation = -16.832352 kcal Electronic energy + Delta-G solvation = -17284.863441 eV Core-core repulsion = 14510.797845 eV Total energy + Delta-G solvation = -2774.065596 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88590 -38.78732 -34.49746 -33.74933 -32.34285 -30.59945 -29.62877 -28.38096 -26.23737 -22.87596 -22.10763 -21.03808 -20.26122 -19.36466 -18.27867 -17.05879 -16.58384 -15.89829 -15.84214 -14.54114 -14.22587 -13.77650 -13.32097 -13.22035 -12.93779 -12.63957 -12.18792 -12.16411 -12.09077 -11.96122 -11.74768 -11.14609 -10.99798 -10.92456 -10.78639 -10.25991 -10.16009 -9.58683 -9.37132 -8.79006 -8.70691 -8.50557 -7.88708 -6.50907 -4.24115 3.22298 3.38092 3.39590 3.58800 3.77769 3.98736 4.39478 4.44023 4.46137 4.72545 4.90714 4.98908 5.07711 5.12033 5.23492 5.28201 5.33935 5.55705 5.59619 5.70703 5.91134 5.96110 6.04221 6.14057 6.36240 6.79977 6.88522 7.08973 7.26324 7.33657 7.45971 7.85815 8.29130 8.62936 8.80892 9.24458 9.50323 10.89364 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052468 B = 0.004723 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.531764 B = 5927.486996 C = 6108.080718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.623 4.623 8 H 0.056 0.944 9 C 0.258 3.742 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.742 5.742 14 C 0.135 3.865 15 H 0.088 0.912 16 C -0.162 4.162 17 C 0.047 3.953 18 H 0.114 0.886 19 C -0.114 4.114 20 C -0.115 4.115 21 C 0.040 3.960 22 H 0.116 0.884 23 N -0.649 5.649 24 H 0.273 0.727 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.388 0.612 28 H 0.391 0.609 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.154 -16.667 0.866 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.183 4.183 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.661 4.661 8 H 0.074 0.926 9 C 0.136 3.864 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.399 5.399 14 C 0.027 3.973 15 H 0.106 0.894 16 C -0.202 4.202 17 C -0.063 4.063 18 H 0.132 0.868 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.071 4.071 22 H 0.134 0.866 23 N -0.275 5.275 24 H 0.083 0.917 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.220 0.780 28 H 0.225 0.775 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.931 -15.408 1.625 17.883 hybrid contribution 0.947 -1.179 -1.052 1.843 sum 9.878 -16.587 0.572 19.314 Atomic orbital electron populations 1.70750 1.06871 1.31085 1.44944 1.25872 0.96420 1.02680 0.93343 0.83444 0.74796 0.74892 0.76527 1.20551 1.21311 1.21330 1.22059 0.94525 0.91510 1.57993 0.92573 1.19031 0.88484 0.82608 0.96283 1.45515 1.10664 1.04160 1.77285 1.16182 0.85287 0.81070 0.78201 1.90863 1.14260 1.84249 1.58705 1.45175 1.08547 1.04565 1.81633 1.22473 0.97041 0.80616 0.97178 0.89359 1.23607 0.99416 0.98209 0.98939 1.24294 0.91852 0.97614 0.92504 0.86839 1.22599 0.97165 0.97191 0.98238 1.22546 0.93934 0.99168 0.99664 1.24699 0.99533 0.87385 0.95472 0.86579 1.66031 1.03167 1.12752 1.45563 0.91670 0.96744 0.96810 0.77957 0.77491 0.90638 0.90284 0.91301 0.91560 0.90735 0.91458 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.65 55.43 0.76 -26.72 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.45 29.90 -169.99 -5.08 19.37 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.62 -17.23 9.28 -34.44 -0.32 -17.55 16 8 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 9 C 0.26 6.91 4.74 -5.20 -0.02 6.89 16 10 N -0.72 -15.58 5.55 -66.42 -0.37 -15.95 16 11 C 0.69 14.15 8.56 -86.92 -0.74 13.41 16 12 O -0.60 -14.83 16.07 5.29 0.08 -14.75 16 13 N -0.74 -10.82 3.64 -56.25 -0.20 -11.03 16 14 C 0.14 1.74 2.97 -65.44 -0.19 1.55 16 15 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 16 C -0.16 -1.50 6.09 -24.24 -0.15 -1.65 16 17 C 0.05 0.42 5.59 -62.55 -0.35 0.07 16 18 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.11 -1.06 6.44 -24.24 -0.16 -1.22 16 20 C -0.11 -1.35 6.32 -24.24 -0.15 -1.50 16 21 C 0.04 0.52 5.46 -62.55 -0.34 0.17 16 22 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 23 N -0.65 -6.91 7.71 -88.22 -0.68 -7.59 16 24 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 25 H 0.01 0.43 8.01 -51.93 -0.42 0.01 16 26 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 27 H 0.39 7.21 8.34 -40.82 -0.34 6.87 16 28 H 0.39 4.65 8.03 -40.82 -0.33 4.32 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.68 7.34 -51.93 -0.38 0.30 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 33 H 0.07 0.94 6.48 -51.93 -0.34 0.60 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.33 3.17 8.66 -39.29 -0.34 2.83 16 LS Contribution 284.66 15.07 4.29 4.29 Total: -1.00 -32.89 284.66 -8.70 -41.59 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.97 Total: 10.09 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.53 Total: 0.71 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.50 Total: -61.29 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.08 Total: -14.75 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.89 -8.70 -41.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.753 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds