Wall clock time and date at job start Sun Mar 29 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00296 * 2 1 4 4 H 1.48496 * 109.46987 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47061 * 120.00139 * 3 2 1 6 6 H 1.48498 * 109.46877 * 239.99976 * 3 2 1 7 7 C 1.37885 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99895 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99924 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99842 * 179.97438 * 13 11 10 15 15 H 1.08993 * 110.54602 * 36.93634 * 14 13 11 16 16 C 1.54836 * 110.61262 * 159.97430 * 14 13 11 17 17 C 1.55854 * 103.51846 * 118.50546 * 16 14 13 18 18 H 1.08998 * 115.58052 * 158.89095 * 17 16 14 19 19 C 1.55855 * 105.03268 * 288.27010 * 17 16 14 20 20 C 1.54836 * 103.51796 * 71.72953 * 19 17 16 21 21 C 1.55846 * 110.61002 * 274.07202 * 14 13 11 22 22 H 1.09002 * 115.58474 * 82.60278 * 21 14 13 23 23 N 1.50647 * 101.02676 * 32.99276 * 17 16 14 24 24 H 0.96992 * 120.00308 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47262 * 300.00653 * 9 7 2 26 26 H 1.09004 * 109.46649 * 59.99991 * 9 7 2 27 27 H 0.97002 * 120.00196 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00278 * 359.97438 * 13 11 10 29 29 H 1.08995 * 110.61045 * 237.01189 * 16 14 13 30 30 H 1.09007 * 110.61373 * 359.97438 * 16 14 13 31 31 H 1.08993 * 110.61210 * 190.23289 * 19 17 16 32 32 H 1.08998 * 110.61371 * 313.22139 * 19 17 16 33 33 H 1.09004 * 110.61403 * 241.49576 * 20 19 17 34 34 H 1.08993 * 110.61451 * 118.50115 * 20 19 17 35 35 H 1.00901 * 110.99920 * 62.34444 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5581 -5.1055 -0.0011 13 7 2.6293 -5.9078 -0.0005 14 6 2.1409 -7.2890 -0.0005 15 1 1.2445 -7.3778 -0.6142 16 6 3.2431 -8.2570 -0.4962 17 6 3.4806 -9.1950 0.7256 18 1 3.9416 -10.1562 0.4984 19 6 4.2177 -8.3111 1.7766 20 6 3.1155 -7.3431 2.2722 21 6 1.8597 -7.7715 1.4545 22 1 0.8945 -7.4803 1.8687 23 7 2.0966 -9.2530 1.3177 24 1 -0.4850 -0.8400 -0.0004 25 1 0.6245 -2.5571 0.8896 26 1 0.6239 -2.5566 -0.8903 27 1 3.1566 -3.4355 -0.0009 28 1 3.5830 -5.7306 -0.0002 29 1 2.8937 -8.8281 -1.3563 30 1 4.1527 -7.7090 -0.7423 31 1 4.5896 -8.9223 2.5988 32 1 5.0323 -7.7579 1.3091 33 1 3.3837 -6.3102 2.0504 34 1 2.9411 -7.4747 3.3400 35 1 1.4428 -9.6653 0.6690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:35 Heat of formation + Delta-G solvation = -43.255125 kcal Electronic energy + Delta-G solvation = -17286.009218 eV Core-core repulsion = 14510.797845 eV Total energy + Delta-G solvation = -2775.211374 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.95527 -40.34292 -36.47766 -35.23947 -34.33143 -31.47420 -30.46823 -29.73553 -28.06439 -24.89390 -23.13638 -22.33212 -21.50836 -20.35173 -20.02090 -18.68744 -17.75124 -17.32476 -17.00609 -16.12140 -15.84891 -15.58266 -15.06409 -14.43633 -14.39634 -13.92924 -13.82494 -13.48420 -13.09591 -13.00587 -12.90198 -12.65506 -12.53424 -11.96901 -11.90959 -11.86519 -11.40580 -11.17472 -10.92956 -10.76837 -10.51514 -9.99456 -9.46134 -8.79736 -6.55013 1.56079 1.65264 1.75921 1.84686 2.11656 2.56181 3.07571 3.08894 3.42586 3.53167 3.60344 3.86344 4.08428 4.12390 4.26778 4.38699 4.49659 4.67662 4.73988 4.76721 4.94461 4.96944 5.00731 5.09319 5.19647 5.22418 5.43889 5.45874 5.49868 5.61768 6.03475 6.13608 6.28154 6.35818 7.14446 7.31308 7.60989 8.59727 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052468 B = 0.004723 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.531764 B = 5927.486996 C = 6108.080718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.032 4.032 3 Si 1.131 2.869 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.273 3.727 10 N -0.719 5.719 11 C 0.691 3.309 12 O -0.649 6.649 13 N -0.715 5.715 14 C 0.129 3.871 15 H 0.062 0.938 16 C -0.149 4.149 17 C 0.057 3.943 18 H 0.144 0.856 19 C -0.110 4.110 20 C -0.117 4.117 21 C 0.032 3.968 22 H 0.084 0.916 23 N -0.652 5.652 24 H 0.253 0.747 25 H -0.020 1.020 26 H -0.020 1.020 27 H 0.405 0.595 28 H 0.410 0.590 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.561 -17.500 0.499 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.231 4.231 3 Si 0.950 3.050 4 H -0.212 1.212 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.666 4.666 8 H 0.095 0.905 9 C 0.149 3.851 10 N -0.373 5.373 11 C 0.391 3.609 12 O -0.531 6.531 13 N -0.372 5.372 14 C 0.021 3.979 15 H 0.080 0.920 16 C -0.189 4.189 17 C -0.053 4.053 18 H 0.161 0.839 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.080 4.080 22 H 0.102 0.898 23 N -0.279 5.279 24 H 0.062 0.938 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.241 0.759 28 H 0.247 0.753 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.420 -16.323 1.257 20.549 hybrid contribution -0.147 -1.043 -0.915 1.396 sum 12.272 -17.366 0.342 21.267 Atomic orbital electron populations 1.70898 1.08316 1.29909 1.47439 1.27669 0.96316 1.07144 0.91929 0.82776 0.73898 0.69922 0.78381 1.21220 1.18833 1.18792 1.22412 0.95581 0.91603 1.57013 0.90538 1.18520 0.88788 0.84664 0.93135 1.45116 1.10695 1.03618 1.77851 1.16347 0.85239 0.81568 0.77742 1.90834 1.16769 1.84926 1.60602 1.44937 1.08673 1.03998 1.79554 1.22673 0.97893 0.80042 0.97280 0.91970 1.23570 0.98387 0.97325 0.99570 1.24470 0.90443 0.98721 0.91645 0.83861 1.22635 0.96604 0.96773 0.98736 1.22536 0.94417 0.99382 0.99161 1.24540 0.98746 0.89250 0.95434 0.89808 1.66020 1.04625 1.10752 1.46457 0.93756 1.00214 1.00211 0.75915 0.75291 0.89108 0.88539 0.90580 0.89631 0.91776 0.92237 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.65 21.45 0.29 -57.94 16 2 C -0.03 -1.82 5.46 84.66 0.46 -1.36 16 3 Si 1.13 47.97 29.90 68.60 2.05 50.02 16 4 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.63 -34.78 9.28 25.60 0.24 -34.55 16 8 H 0.08 3.85 7.60 -2.91 -0.02 3.83 16 9 C 0.27 15.20 4.74 85.63 0.41 15.60 16 10 N -0.72 -31.25 5.55 -482.30 -2.68 -33.92 16 11 C 0.69 28.80 8.56 179.05 1.53 30.34 16 12 O -0.65 -33.60 16.07 -4.00 -0.06 -33.67 16 13 N -0.71 -20.24 3.64 -450.14 -1.64 -21.88 16 14 C 0.13 3.22 2.97 46.60 0.14 3.36 16 15 H 0.06 1.91 7.70 -2.39 -0.02 1.89 16 16 C -0.15 -2.27 6.09 32.21 0.20 -2.07 16 17 C 0.06 0.79 5.59 46.15 0.26 1.05 16 18 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 19 C -0.11 -1.67 6.44 32.21 0.21 -1.46 16 20 C -0.12 -2.61 6.32 32.21 0.20 -2.41 16 21 C 0.03 0.82 5.46 46.15 0.25 1.07 16 22 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 23 N -0.65 -12.85 7.71 -433.02 -3.34 -16.18 16 24 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 25 H -0.02 -1.24 8.01 -2.39 -0.02 -1.26 16 26 H -0.02 -1.23 8.01 -2.38 -0.02 -1.25 16 27 H 0.41 14.58 8.34 -92.71 -0.77 13.80 16 28 H 0.41 8.73 8.03 -92.71 -0.74 7.98 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.20 7.34 -2.38 -0.02 1.18 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.01 7.82 -2.39 -0.02 0.99 16 33 H 0.06 1.54 6.48 -2.39 -0.02 1.52 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.34 6.00 8.66 -89.69 -0.78 5.23 16 Total: -1.00 -74.69 284.66 -2.55 -77.24 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -1.07 Total: 26.77 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 3.89 Total: 9.57 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -7.36 Total: -129.93 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.06 Total: -33.67 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.05 Total: 50.02 kcal Total: -74.69 -2.55 -77.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.987 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds