Wall clock time and date at job start Sun Mar 29 2020 22:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47367 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.97822 * 54.81427 * 16 15 14 18 18 C 1.54286 * 109.98733 * 176.13077 * 16 15 14 19 19 C 1.54980 * 103.75125 * 142.47208 * 18 16 15 20 20 C 1.54891 * 102.33458 * 322.91180 * 19 18 16 21 21 C 1.51448 * 109.98369 * 293.54619 * 16 15 14 22 22 O 1.20755 * 126.34319 * 60.99053 * 21 16 15 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 28 28 H 1.09009 * 109.46700 * 300.00334 * 15 14 12 29 29 H 1.08998 * 109.47265 * 60.00066 * 15 14 12 30 30 H 1.09003 * 110.56255 * 261.03796 * 18 16 15 31 31 H 1.09000 * 110.56425 * 23.90211 * 18 16 15 32 32 H 1.09007 * 110.82931 * 204.70868 * 19 18 16 33 33 H 1.08995 * 110.83529 * 81.12674 * 19 18 16 34 34 H 1.08999 * 110.44488 * 278.89179 * 20 19 18 35 35 H 1.08995 * 110.54575 * 156.41694 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6852 -0.2189 -4.9000 17 1 1.9671 0.8334 -4.8631 18 6 2.2708 -0.8785 -6.1658 19 6 1.1045 -0.8200 -7.1848 20 6 -0.1316 -1.0795 -6.2883 21 6 0.1792 -0.3480 -4.9944 22 8 -0.6256 0.0557 -4.1896 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7006 1.1552 3.4844 27 1 1.1493 0.5391 -2.5435 28 1 3.2846 -0.9410 -3.6510 29 1 1.8308 -1.9681 -3.6508 30 1 3.1275 -0.3122 -6.5312 31 1 2.5516 -1.9122 -5.9639 32 1 1.2082 -1.6014 -7.9378 33 1 1.0458 0.1636 -7.6508 34 1 -0.2501 -2.1471 -6.1030 35 1 -1.0310 -0.6718 -6.7495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625453204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:58 Heat of formation + Delta-G solvation = -95.558262 kcal Electronic energy + Delta-G solvation = -17155.029129 eV Core-core repulsion = 14345.256970 eV Total energy + Delta-G solvation = -2809.772159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17176 -38.49822 -36.49880 -34.01573 -33.63327 -30.78015 -29.52063 -27.20035 -25.04734 -24.40515 -22.05419 -21.35436 -19.38395 -18.94467 -16.79913 -16.35305 -16.11006 -15.51300 -15.08552 -14.58225 -14.40997 -14.19276 -13.68418 -13.33075 -13.04192 -12.62687 -12.59192 -12.16031 -11.59058 -11.49880 -11.43686 -11.34295 -10.99436 -10.92403 -10.65934 -10.58757 -10.15998 -9.89462 -9.49247 -8.89554 -8.54551 -8.37412 -8.24601 -5.95535 -3.98770 1.85579 3.40803 3.42814 3.48315 3.77648 3.85093 4.03605 4.21738 4.51209 4.59045 4.63761 4.86638 5.06723 5.19443 5.23371 5.37117 5.47406 5.50356 5.60729 5.71700 5.82303 5.88241 6.00404 6.37798 6.76736 6.97539 7.04066 7.13387 7.42089 7.57840 7.85494 8.06870 8.24027 8.53337 9.09459 9.31638 9.66197 11.12004 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.051227 B = 0.005180 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.459567 B = 5404.321088 C = 5745.843300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.550 6.550 14 N -0.747 5.747 15 C 0.135 3.865 16 C -0.165 4.165 17 H 0.108 0.892 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.184 4.184 21 C 0.367 3.633 22 O -0.428 6.428 23 H 0.029 0.971 24 H 0.092 0.908 25 H 0.015 0.985 26 H 0.260 0.740 27 H 0.400 0.600 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -0.597 -19.665 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.426 6.426 14 N -0.402 5.402 15 C 0.011 3.989 16 C -0.184 4.184 17 H 0.126 0.874 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.222 4.222 21 C 0.240 3.760 22 O -0.298 6.298 23 H 0.048 0.952 24 H 0.111 0.889 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.235 0.765 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.412 -0.994 -18.982 19.013 hybrid contribution 0.045 -0.064 0.652 0.657 sum -0.367 -1.058 -18.330 18.364 Atomic orbital electron populations 1.21724 0.96407 0.99761 1.01066 1.18865 0.94248 0.96771 0.89293 0.93081 1.21113 1.30852 1.12831 0.89060 0.90894 1.24953 0.95159 0.95109 0.99069 1.69872 1.37069 1.23173 1.23525 0.86509 0.79199 0.79727 0.81682 1.20233 1.21406 1.20245 1.21979 0.78267 0.84228 0.84504 1.90515 1.38244 1.27001 1.86887 1.46342 1.55524 1.32980 1.05397 1.21048 0.99293 0.95826 0.82769 1.22655 0.95714 1.03022 0.97042 0.87440 1.22308 0.98018 1.01781 0.92990 1.22420 0.93503 1.02557 0.97191 1.22913 1.00307 1.02783 0.96170 1.24940 0.90647 0.74867 0.85563 1.90470 1.55710 1.40224 1.43436 0.95202 0.88933 0.96582 0.92973 0.76489 0.91075 0.92039 0.90218 0.90186 0.90249 0.90765 0.87814 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.86 37.16 0.33 -2.95 16 2 C 0.03 0.77 2.64 -92.92 -0.25 0.53 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.74 8.38 -34.44 -0.29 -15.03 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -26.03 11.31 55.43 0.63 -25.40 16 8 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 12.54 7.15 -10.98 -0.08 12.46 16 13 O -0.55 -14.87 15.46 5.56 0.09 -14.78 16 14 N -0.75 -14.03 5.12 -60.30 -0.31 -14.34 16 15 C 0.14 1.99 4.93 -4.05 -0.02 1.97 16 16 C -0.16 -1.74 2.92 -90.74 -0.26 -2.00 16 17 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.11 -0.81 6.40 -25.01 -0.16 -0.97 16 19 C -0.12 -0.72 6.95 -24.69 -0.17 -0.89 16 20 C -0.18 -1.49 6.72 -26.32 -0.18 -1.67 16 21 C 0.37 4.39 7.07 -28.10 -0.20 4.19 16 22 O -0.43 -6.89 16.90 6.00 0.10 -6.79 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 25 H 0.02 0.34 7.56 -51.93 -0.39 -0.05 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.40 7.09 6.98 -40.82 -0.29 6.80 16 28 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 32 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -33.71 291.91 -6.60 -40.31 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.12 Total: 2.01 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.37 Total: -2.80 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.32 Total: -39.74 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.19 Total: -21.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.71 -6.60 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625453204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.247 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds