Wall clock time and date at job start Sun Mar 29 2020 22:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47367 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.97822 * 54.81427 * 16 15 14 18 18 C 1.54286 * 109.98733 * 176.13077 * 16 15 14 19 19 C 1.54980 * 103.75125 * 142.47208 * 18 16 15 20 20 C 1.54891 * 102.33458 * 322.91180 * 19 18 16 21 21 C 1.51448 * 109.98369 * 293.54619 * 16 15 14 22 22 O 1.20755 * 126.34319 * 60.99053 * 21 16 15 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 28 28 H 1.09009 * 109.46700 * 300.00334 * 15 14 12 29 29 H 1.08998 * 109.47265 * 60.00066 * 15 14 12 30 30 H 1.09003 * 110.56255 * 261.03796 * 18 16 15 31 31 H 1.09000 * 110.56425 * 23.90211 * 18 16 15 32 32 H 1.09007 * 110.82931 * 204.70868 * 19 18 16 33 33 H 1.08995 * 110.83529 * 81.12674 * 19 18 16 34 34 H 1.08999 * 110.44488 * 278.89179 * 20 19 18 35 35 H 1.08995 * 110.54575 * 156.41694 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6852 -0.2189 -4.9000 17 1 1.9671 0.8334 -4.8631 18 6 2.2708 -0.8785 -6.1658 19 6 1.1045 -0.8200 -7.1848 20 6 -0.1316 -1.0795 -6.2883 21 6 0.1792 -0.3480 -4.9944 22 8 -0.6256 0.0557 -4.1896 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7006 1.1552 3.4844 27 1 1.1493 0.5391 -2.5435 28 1 3.2846 -0.9410 -3.6510 29 1 1.8308 -1.9681 -3.6508 30 1 3.1275 -0.3122 -6.5312 31 1 2.5516 -1.9122 -5.9639 32 1 1.2082 -1.6014 -7.9378 33 1 1.0458 0.1636 -7.6508 34 1 -0.2501 -2.1471 -6.1030 35 1 -1.0310 -0.6718 -6.7495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625453204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:57 Heat of formation + Delta-G solvation = -118.601889 kcal Electronic energy + Delta-G solvation = -17156.028375 eV Core-core repulsion = 14345.256970 eV Total energy + Delta-G solvation = -2810.771406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24115 -40.22742 -37.43231 -35.80892 -35.45175 -32.69252 -30.78174 -27.96159 -27.22937 -25.71539 -23.86296 -22.09976 -20.92751 -20.07279 -18.39514 -17.94542 -17.52875 -16.86065 -16.62828 -16.22267 -15.97158 -15.37987 -14.86983 -14.73406 -14.46086 -13.97420 -13.73663 -13.65183 -13.32595 -12.98765 -12.73614 -12.62603 -12.38768 -12.27897 -12.18687 -12.02305 -11.99804 -11.53645 -11.07936 -10.62784 -10.46325 -10.33616 -9.96647 -8.15683 -6.27328 0.91627 1.40380 1.42873 1.51337 1.88174 2.33241 2.51424 3.13040 3.13923 3.46877 3.78548 3.88482 4.22037 4.25796 4.33518 4.37510 4.61940 4.68787 4.69990 4.73881 4.91993 4.92962 4.98262 5.03458 5.20468 5.22988 5.41156 5.44750 5.54438 5.70885 5.89657 6.17235 6.49683 6.68132 6.82934 7.37330 7.49358 8.90353 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.051227 B = 0.005180 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.459567 B = 5404.321088 C = 5745.843300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.586 6.586 14 N -0.730 5.730 15 C 0.130 3.870 16 C -0.159 4.159 17 H 0.117 0.883 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.181 4.181 21 C 0.358 3.642 22 O -0.479 6.479 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.407 0.593 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -0.724 -21.468 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.466 6.466 14 N -0.383 5.383 15 C 0.007 3.993 16 C -0.178 4.178 17 H 0.135 0.865 18 C -0.145 4.145 19 C -0.146 4.146 20 C -0.218 4.218 21 C 0.235 3.765 22 O -0.353 6.353 23 H 0.038 0.962 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.243 0.757 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.129 -1.096 -20.846 20.875 hybrid contribution -0.051 0.005 1.154 1.155 sum -0.180 -1.091 -19.692 19.723 Atomic orbital electron populations 1.21518 0.95502 0.99066 1.01300 1.18810 0.94962 0.96029 0.90043 0.94240 1.21250 1.31714 1.12903 0.91007 0.93108 1.25671 0.95102 0.95779 1.01627 1.69958 1.37094 1.23722 1.24431 0.85577 0.78735 0.78628 0.78480 1.19899 1.19849 1.20139 1.21505 0.78171 0.83731 0.85629 1.90486 1.40026 1.28470 1.87602 1.46148 1.54255 1.32716 1.05225 1.21315 0.99650 0.95694 0.82678 1.22708 0.95126 1.03482 0.96476 0.86488 1.22353 0.99019 1.01878 0.91223 1.22446 0.91226 1.04122 0.96758 1.22963 1.01944 1.02554 0.94335 1.25649 0.90938 0.73711 0.86202 1.90447 1.56979 1.42428 1.45453 0.96197 0.90882 0.94001 0.92546 0.75735 0.90592 0.92764 0.88253 0.89893 0.87955 0.89594 0.86996 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.86 71.98 0.64 -5.22 16 2 C 0.02 1.23 2.64 -12.29 -0.03 1.19 16 3 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 4 C -0.53 -32.05 8.38 25.60 0.21 -31.83 16 5 H 0.05 3.24 6.75 -2.91 -0.02 3.22 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -53.27 11.31 21.45 0.24 -53.02 16 8 Si 0.96 46.15 29.54 68.60 2.03 48.17 16 9 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 C 0.52 25.58 7.15 87.66 0.63 26.20 16 13 O -0.59 -32.44 15.46 -3.04 -0.05 -32.49 16 14 N -0.73 -27.40 5.12 -463.06 -2.37 -29.78 16 15 C 0.13 3.72 4.93 86.38 0.43 4.15 16 16 C -0.16 -3.02 2.92 -10.87 -0.03 -3.06 16 17 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 18 C -0.11 -1.17 6.40 31.71 0.20 -0.97 16 19 C -0.11 -0.87 6.95 31.92 0.22 -0.65 16 20 C -0.18 -2.45 6.72 30.86 0.21 -2.24 16 21 C 0.36 8.09 7.07 29.71 0.21 8.30 16 22 O -0.48 -15.34 16.90 -1.43 -0.02 -15.36 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 3.99 6.06 -2.38 -0.01 3.97 16 25 H 0.04 1.84 7.56 -2.38 -0.02 1.82 16 26 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.41 14.33 6.98 -92.71 -0.65 13.68 16 28 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.91 7.85 -2.39 -0.02 0.89 16 32 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.29 291.91 3.39 -70.89 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.44 Total: 14.26 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 3.13 Total: -2.67 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.13 Total: -82.80 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.07 Total: -47.85 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.29 3.39 -70.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625453204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.707 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds