Wall clock time and date at job start Sun Mar 29 2020 22:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.47101 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.97458 * 54.81986 * 16 15 14 18 18 C 1.54278 * 109.98316 * 176.13032 * 16 15 14 19 19 C 1.54983 * 103.75306 * 142.47300 * 18 16 15 20 20 C 1.54889 * 102.33341 * 322.91688 * 19 18 16 21 21 C 1.51450 * 109.98666 * 293.54616 * 16 15 14 22 22 O 1.20758 * 126.33835 * 60.98860 * 21 16 15 23 23 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 24 24 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 25 25 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 26 26 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 28 28 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 29 29 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 30 30 H 1.09003 * 110.57479 * 261.04009 * 18 16 15 31 31 H 1.09001 * 110.57071 * 23.90603 * 18 16 15 32 32 H 1.09000 * 110.84031 * 204.70308 * 19 18 16 33 33 H 1.09003 * 110.83427 * 81.12247 * 19 18 16 34 34 H 1.08997 * 110.44127 * 278.88705 * 20 19 18 35 35 H 1.08997 * 110.54737 * 156.41379 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6860 -0.2188 4.8999 17 1 0.6000 -0.1332 4.8635 18 6 2.1128 -0.9908 6.1656 19 6 2.4477 0.1282 7.1843 20 6 3.1046 1.2065 6.2872 21 6 2.3108 1.1576 4.9937 22 8 2.1987 2.0507 4.1887 23 1 -0.3633 -1.0239 -0.0882 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 0.4355 0.9308 26 1 2.9400 -0.1044 -4.2545 27 1 1.1495 0.5389 2.5435 28 1 1.8327 -1.9681 3.6508 29 1 3.2856 -0.9399 3.6505 30 1 1.2932 -1.6092 6.5317 31 1 2.9932 -1.6008 5.9636 32 1 3.1499 -0.2302 7.9371 33 1 1.5404 0.5122 7.6507 34 1 4.1504 0.9617 6.1015 35 1 3.0209 2.1906 6.7483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625453206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:02 Heat of formation + Delta-G solvation = -93.727822 kcal Electronic energy + Delta-G solvation = -17181.325532 eV Core-core repulsion = 14371.632747 eV Total energy + Delta-G solvation = -2809.692785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24243 -38.60952 -36.56235 -34.06782 -33.57618 -31.34031 -29.83631 -27.27066 -25.19130 -24.54166 -22.01879 -21.38497 -19.43036 -18.94027 -17.01267 -16.78621 -16.33859 -15.60873 -15.21860 -14.59571 -14.45414 -14.12680 -13.80079 -13.24928 -13.15927 -12.94166 -12.53758 -12.27601 -12.03954 -11.61206 -11.54320 -11.49770 -11.30877 -11.04791 -11.01121 -10.69033 -10.19894 -9.75154 -9.56513 -9.10772 -8.63857 -8.49475 -8.43269 -6.01447 -4.00225 1.78022 3.30542 3.38344 3.39524 3.69905 3.73809 3.95884 4.16494 4.44429 4.51324 4.58433 4.81358 5.01200 5.13584 5.18093 5.30114 5.43110 5.45770 5.56740 5.67114 5.77711 5.81068 5.94561 6.13032 6.23278 6.47366 6.59403 6.90638 7.03193 7.24461 7.34247 7.62196 8.22899 8.60531 9.13858 9.22371 9.58890 11.11864 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038089 B = 0.005868 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.943552 B = 4770.108946 C = 5102.916908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.006 4.006 3 H 0.054 0.946 4 C -0.493 4.493 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.520 3.480 13 O -0.533 6.533 14 N -0.749 5.749 15 C 0.135 3.865 16 C -0.165 4.165 17 H 0.108 0.892 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.184 4.184 21 C 0.368 3.632 22 O -0.432 6.432 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.026 0.974 26 H 0.264 0.736 27 H 0.398 0.602 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 3.373 22.264 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 H 0.072 0.928 4 C -0.531 4.531 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.698 3.302 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.309 3.691 13 O -0.407 6.407 14 N -0.405 5.405 15 C 0.010 3.990 16 C -0.184 4.184 17 H 0.126 0.874 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.222 4.222 21 C 0.241 3.759 22 O -0.303 6.303 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.513 3.136 21.514 21.886 hybrid contribution -0.172 1.368 0.055 1.380 sum -2.685 4.504 21.570 22.198 Atomic orbital electron populations 1.21934 0.96816 1.01256 0.99049 1.19348 0.94079 0.97043 0.92287 0.92770 1.20751 1.42851 0.96143 0.93380 0.89636 1.25018 0.94663 0.97977 0.95347 1.69888 1.46254 1.35636 1.01659 0.86971 0.79148 0.86775 0.77350 1.20135 1.21265 1.18879 1.21749 0.78946 0.84453 0.83994 1.90570 1.37111 1.26431 1.86629 1.46391 1.55839 1.32817 1.05494 1.21069 0.99147 0.96162 0.82586 1.22657 1.02946 0.95706 0.97113 0.87428 1.22311 1.02510 0.97369 0.92921 1.22422 1.00936 0.95109 0.97205 1.22915 1.01594 1.01580 0.96108 1.24964 0.77670 0.87703 0.85537 1.90454 1.53733 1.42537 1.43541 0.92941 0.92727 0.95537 0.92603 0.76697 0.90894 0.91885 0.90168 0.90107 0.90187 0.90767 0.87732 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.12 37.16 0.34 -2.44 16 2 C -0.01 -0.14 2.30 -92.92 -0.21 -0.36 16 3 H 0.05 1.32 5.29 -51.93 -0.27 1.05 16 4 C -0.49 -14.65 8.36 -34.44 -0.29 -14.93 16 5 H 0.09 2.86 7.61 -52.49 -0.40 2.46 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 8 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.19 6.82 56.52 0.39 -5.81 16 12 C 0.52 12.10 7.15 -10.99 -0.08 12.02 16 13 O -0.53 -14.37 15.77 5.55 0.09 -14.28 16 14 N -0.75 -13.36 5.09 -60.30 -0.31 -13.67 16 15 C 0.13 1.90 4.93 -4.05 -0.02 1.88 16 16 C -0.16 -1.63 2.92 -90.74 -0.26 -1.90 16 17 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -0.77 6.40 -25.01 -0.16 -0.93 16 19 C -0.12 -0.67 6.95 -24.69 -0.17 -0.84 16 20 C -0.18 -1.42 6.72 -26.32 -0.18 -1.60 16 21 C 0.37 4.19 7.07 -28.10 -0.20 3.99 16 22 O -0.43 -6.66 16.90 6.00 0.10 -6.56 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.03 0.45 7.43 -51.93 -0.39 0.07 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.40 6.51 6.93 -40.82 -0.28 6.23 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -35.53 291.96 -5.99 -41.52 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.13 Total: 1.85 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.33 Total: -3.07 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.47 Total: -41.15 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.19 Total: -20.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.53 -5.99 -41.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625453206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.205 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds