Wall clock time and date at job start Sun Mar 29 2020 22:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.47101 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.97458 * 54.81986 * 16 15 14 18 18 C 1.54278 * 109.98316 * 176.13032 * 16 15 14 19 19 C 1.54983 * 103.75306 * 142.47300 * 18 16 15 20 20 C 1.54889 * 102.33341 * 322.91688 * 19 18 16 21 21 C 1.51450 * 109.98666 * 293.54616 * 16 15 14 22 22 O 1.20758 * 126.33835 * 60.98860 * 21 16 15 23 23 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 24 24 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 25 25 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 26 26 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 28 28 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 29 29 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 30 30 H 1.09003 * 110.57479 * 261.04009 * 18 16 15 31 31 H 1.09001 * 110.57071 * 23.90603 * 18 16 15 32 32 H 1.09000 * 110.84031 * 204.70308 * 19 18 16 33 33 H 1.09003 * 110.83427 * 81.12247 * 19 18 16 34 34 H 1.08997 * 110.44127 * 278.88705 * 20 19 18 35 35 H 1.08997 * 110.54737 * 156.41379 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6860 -0.2188 4.8999 17 1 0.6000 -0.1332 4.8635 18 6 2.1128 -0.9908 6.1656 19 6 2.4477 0.1282 7.1843 20 6 3.1046 1.2065 6.2872 21 6 2.3108 1.1576 4.9937 22 8 2.1987 2.0507 4.1887 23 1 -0.3633 -1.0239 -0.0882 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 0.4355 0.9308 26 1 2.9400 -0.1044 -4.2545 27 1 1.1495 0.5389 2.5435 28 1 1.8327 -1.9681 3.6508 29 1 3.2856 -0.9399 3.6505 30 1 1.2932 -1.6092 6.5317 31 1 2.9932 -1.6008 5.9636 32 1 3.1499 -0.2302 7.9371 33 1 1.5404 0.5122 7.6507 34 1 4.1504 0.9617 6.1015 35 1 3.0209 2.1906 6.7483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625453206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:01 Heat of formation + Delta-G solvation = -120.023626 kcal Electronic energy + Delta-G solvation = -17182.465804 eV Core-core repulsion = 14371.632747 eV Total energy + Delta-G solvation = -2810.833057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26003 -40.26841 -37.43601 -35.66415 -35.48044 -33.37768 -30.91372 -27.98048 -27.25509 -25.76119 -23.73297 -22.08271 -20.87460 -20.06485 -19.16407 -17.91203 -17.57508 -16.97674 -16.56601 -16.09011 -15.97462 -15.45631 -14.96658 -14.66376 -14.42924 -14.30140 -13.88691 -13.67629 -13.48231 -13.12453 -12.97707 -12.65562 -12.39584 -12.26646 -12.13350 -12.02389 -11.78233 -11.53828 -11.27887 -10.78929 -10.47511 -10.46386 -9.98216 -8.30158 -6.35843 0.90191 1.32556 1.35047 1.45077 1.85667 2.31930 2.34443 3.06005 3.13433 3.46386 3.78868 3.87446 4.18594 4.24262 4.26677 4.36758 4.38587 4.61807 4.68911 4.69311 4.72021 4.83233 4.92625 5.02693 5.10982 5.20505 5.23131 5.40973 5.46589 5.53834 5.55008 6.23073 6.47704 6.62013 6.80500 7.25277 7.47207 8.87766 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038089 B = 0.005868 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.943552 B = 4770.108946 C = 5102.916908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 H 0.064 0.936 4 C -0.505 4.505 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.942 3.058 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.230 1.230 12 C 0.518 3.482 13 O -0.583 6.583 14 N -0.729 5.729 15 C 0.129 3.871 16 C -0.157 4.157 17 H 0.122 0.878 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.182 4.182 21 C 0.360 3.640 22 O -0.479 6.479 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.268 0.732 27 H 0.409 0.591 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 5.320 25.349 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.034 4.034 3 H 0.081 0.919 4 C -0.544 4.544 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.589 5.589 8 Si 0.765 3.235 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.152 1.152 12 C 0.306 3.694 13 O -0.462 6.462 14 N -0.383 5.383 15 C 0.006 3.994 16 C -0.176 4.176 17 H 0.140 0.860 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.219 4.219 21 C 0.237 3.763 22 O -0.354 6.354 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.246 0.754 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.671 5.093 24.677 25.463 hybrid contribution 0.201 0.644 -0.845 1.081 sum -3.471 5.737 23.832 24.757 Atomic orbital electron populations 1.21807 0.93693 1.01302 1.01516 1.19352 0.96478 0.96695 0.90887 0.91861 1.20867 1.43453 0.93900 0.96153 0.95542 1.25993 0.94027 1.04184 0.94488 1.70058 1.47891 1.38219 1.02713 0.85824 0.80293 0.79062 0.78369 1.19879 1.20490 1.15247 1.21458 0.78591 0.83857 0.85452 1.90552 1.39503 1.28612 1.87501 1.46141 1.54562 1.32591 1.05031 1.21310 0.98688 0.96703 0.82735 1.22694 1.03620 0.95004 0.96284 0.86024 1.22357 1.03259 0.97636 0.91362 1.22445 1.01808 0.93570 0.96757 1.22967 1.01398 1.03085 0.94482 1.25624 0.77139 0.87436 0.86114 1.90431 1.55464 1.44064 1.45393 0.93876 0.92457 0.91125 0.92318 0.75419 0.90611 0.92976 0.88198 0.90107 0.88144 0.89471 0.87140 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.12 71.98 0.66 -4.36 16 2 C -0.01 -0.61 2.30 -12.28 -0.03 -0.63 16 3 H 0.06 2.97 5.29 -2.39 -0.01 2.96 16 4 C -0.51 -31.16 8.36 25.60 0.21 -30.95 16 5 H 0.03 1.89 7.61 -2.91 -0.02 1.87 16 6 C 0.01 0.60 5.47 84.66 0.46 1.06 16 7 N -0.95 -62.05 13.96 21.45 0.30 -61.76 16 8 Si 0.94 44.84 26.99 68.60 1.85 46.69 16 9 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.23 -9.60 6.82 99.48 0.68 -8.93 16 12 C 0.52 24.25 7.15 87.66 0.63 24.88 16 13 O -0.58 -32.62 15.77 -3.04 -0.05 -32.67 16 14 N -0.73 -25.09 5.09 -463.08 -2.36 -27.45 16 15 C 0.13 3.48 4.93 86.38 0.43 3.91 16 16 C -0.16 -2.68 2.92 -10.87 -0.03 -2.71 16 17 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 18 C -0.11 -1.07 6.40 31.71 0.20 -0.87 16 19 C -0.11 -0.76 6.95 31.92 0.22 -0.54 16 20 C -0.18 -2.25 6.72 30.86 0.21 -2.04 16 21 C 0.36 7.42 7.07 29.71 0.21 7.63 16 22 O -0.48 -14.09 16.90 -1.44 -0.02 -14.12 16 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.07 2.19 7.43 -2.39 -0.02 2.17 16 26 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 27 H 0.41 12.42 6.93 -92.71 -0.64 11.78 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.84 7.85 -2.39 -0.02 0.82 16 32 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -82.38 291.96 3.30 -79.08 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.41 Total: 14.85 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 3.17 Total: -4.63 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -2.06 Total: -89.20 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.07 Total: -46.79 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.85 Total: 46.69 kcal Total: -82.38 3.30 -79.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625453206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.944 kcal (2) G-P(sol) polarization free energy of solvation -82.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds