Wall clock time and date at job start Sun Mar 29 2020 22:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00583 * 2 1 4 4 H 1.09005 * 110.67142 * 357.03597 * 3 2 1 5 5 O 1.44376 * 110.61891 * 234.07508 * 3 2 1 6 6 C 1.43738 * 106.97760 * 201.43923 * 5 3 2 7 7 C 1.54106 * 107.29454 * 26.50984 * 6 5 3 8 8 C 1.54818 * 104.18506 * 357.97376 * 7 6 5 9 9 H 1.08995 * 110.90480 * 97.34820 * 8 7 6 10 10 C 1.50700 * 110.90712 * 220.92125 * 8 7 6 11 11 O 1.21283 * 119.99803 * 118.54463 * 10 8 7 12 12 N 1.34777 * 119.99675 * 298.82339 * 10 8 7 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 8 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 15 15 C 1.50709 * 109.47273 * 89.99834 * 14 12 10 16 16 H 1.07999 * 119.99476 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47015 * 120.00082 * 19 17 15 22 22 H 1.48507 * 109.47126 * 239.99903 * 19 17 15 23 23 H 1.08001 * 120.00735 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.99311 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99311 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.87659 * 267.09072 * 6 5 3 27 27 H 1.08996 * 109.88362 * 145.93372 * 6 5 3 28 28 H 1.09003 * 110.48776 * 239.30186 * 7 6 5 29 29 H 1.08999 * 110.59861 * 116.70457 * 7 6 5 30 30 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 31 31 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 32 32 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 33 33 H 1.09000 * 109.46889 * 209.99487 * 14 12 10 34 34 H 1.09001 * 109.47460 * 330.00097 * 14 12 10 35 35 H 0.97000 * 120.00447 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3740 2.1476 -0.0527 5 8 3.0044 1.3488 -1.0942 6 6 4.0003 2.3274 -0.7526 7 6 4.0584 2.4043 0.7854 8 6 2.9647 1.4149 1.2563 9 1 3.3984 0.4477 1.5103 10 6 2.1950 1.9792 2.4225 11 8 1.0026 2.1777 2.3231 12 7 2.8327 2.2687 3.5741 13 6 4.2729 2.0290 3.6941 14 6 2.0855 2.8230 4.7057 15 6 1.5710 1.6984 5.5672 16 1 1.7795 0.6735 5.2983 17 6 0.8343 1.9782 6.6985 18 7 0.5801 3.2264 7.0257 19 14 0.1961 0.5844 7.7659 20 1 0.6141 -0.7161 7.1837 21 1 0.7528 0.7156 9.1364 22 1 -1.2864 0.6457 7.8258 23 1 -0.5401 -0.9352 0.0004 24 1 -0.5399 0.9354 0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 3.7214 3.2984 -1.1619 27 1 4.9701 2.0220 -1.1453 28 1 3.8309 3.4146 1.1258 29 1 5.0375 2.0917 1.1483 30 1 4.8169 2.9203 3.3815 31 1 4.5177 1.7989 4.7310 32 1 4.5557 1.1894 3.0591 33 1 2.7418 3.4621 5.2963 34 1 1.2452 3.4095 4.3341 35 1 0.0615 3.4233 7.8214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626878597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:15 Heat of formation + Delta-G solvation = -59.172867 kcal Electronic energy + Delta-G solvation = -17584.014975 eV Core-core repulsion = 14775.820605 eV Total energy + Delta-G solvation = -2808.194370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15462 -38.06107 -34.93503 -33.60892 -32.87081 -31.87213 -28.55465 -27.68417 -25.86258 -23.85996 -22.39949 -21.57549 -19.89521 -18.57203 -16.79371 -16.49371 -16.11173 -15.57156 -15.48542 -14.75178 -14.35203 -13.85129 -13.51085 -13.45554 -12.99292 -12.49952 -12.26181 -12.09882 -11.85794 -11.52070 -11.40111 -11.19580 -10.92409 -10.87815 -10.74169 -10.60056 -10.17328 -9.69291 -9.62656 -9.23959 -8.88255 -8.45947 -7.67584 -6.06561 -4.11326 2.39046 3.28192 3.32967 3.36573 3.41265 3.80595 4.13921 4.42417 4.61257 4.75167 4.88677 5.11591 5.24483 5.26753 5.33827 5.42534 5.51797 5.63827 5.69349 5.82596 5.88256 5.89992 6.03127 6.14298 6.19377 6.76766 6.83196 7.01133 7.04619 7.40834 7.50864 7.89885 8.20899 8.37386 8.87386 9.04983 9.54004 11.01604 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.006793 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.646895 B = 4120.732729 C = 4659.912049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C 0.127 3.873 4 H 0.086 0.914 5 O -0.374 6.374 6 C 0.049 3.951 7 C -0.146 4.146 8 C -0.136 4.136 9 H 0.106 0.894 10 C 0.516 3.484 11 O -0.536 6.536 12 N -0.600 5.600 13 C 0.083 3.917 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 -2.945 -12.178 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.070 3.930 4 H 0.104 0.896 5 O -0.293 6.293 6 C -0.028 4.028 7 C -0.184 4.184 8 C -0.158 4.158 9 H 0.124 0.876 10 C 0.301 3.699 11 O -0.413 6.413 12 N -0.332 5.332 13 C -0.061 4.061 14 C 0.126 3.874 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.129 0.871 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.492 -2.830 -12.253 14.638 hybrid contribution -0.174 -0.646 1.071 1.262 sum 7.318 -3.476 -11.182 13.808 Atomic orbital electron populations 1.23868 0.95754 1.02200 0.97332 1.22491 0.95713 0.96679 1.02369 1.21981 0.90410 0.97103 0.83542 0.89606 1.88881 1.38617 1.60308 1.41541 1.23123 0.92680 0.92771 0.94263 1.23013 0.99205 1.00406 0.95800 1.22867 0.96735 1.00778 0.95449 0.87634 1.19873 0.87578 0.79107 0.83306 1.90668 1.14755 1.53265 1.82599 1.48120 1.08380 1.62546 1.14114 1.21711 0.82011 0.99511 1.02912 1.19303 0.91885 0.94309 0.81914 1.21470 1.33744 0.93208 1.08042 0.92430 1.24938 0.95837 0.95755 0.97598 1.69940 1.39700 1.17651 1.26125 0.86443 0.78801 0.82227 0.79963 1.19810 1.20932 1.20830 0.88161 0.87961 0.87150 0.92314 0.89772 0.90085 0.89622 0.93666 0.90810 0.92467 0.94993 0.93820 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 14.33 29.02 0.42 -1.86 16 2 C -0.15 -2.34 9.24 -36.03 -0.33 -2.67 16 3 C 0.13 2.00 2.73 -26.83 -0.07 1.92 16 4 H 0.09 1.48 7.25 -51.93 -0.38 1.11 16 5 O -0.37 -5.47 11.21 -35.23 -0.39 -5.86 16 6 C 0.05 0.56 7.70 37.73 0.29 0.85 16 7 C -0.15 -1.77 5.09 -25.20 -0.13 -1.90 16 8 C -0.14 -2.12 1.97 -89.76 -0.18 -2.29 16 9 H 0.11 1.52 7.47 -51.93 -0.39 1.13 16 10 C 0.52 10.65 6.97 -10.98 -0.08 10.58 16 11 O -0.54 -13.24 15.38 5.55 0.09 -13.15 16 12 N -0.60 -12.61 2.86 -182.96 -0.52 -13.13 16 13 C 0.08 1.29 9.02 59.84 0.54 1.83 16 14 C 0.24 6.40 5.16 -5.19 -0.03 6.37 16 15 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 24 H 0.10 1.57 7.87 -52.48 -0.41 1.16 16 25 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16 29 H 0.09 0.83 7.35 -51.93 -0.38 0.45 16 30 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -32.83 294.45 -5.82 -38.65 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.15 Total: -1.12 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 0.01 Total: -0.81 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.21 Total: -39.03 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.31 Total: -19.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.83 -5.82 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626878597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.526 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds