Wall clock time and date at job start Sun Mar 29 2020 22:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00583 * 2 1 4 4 H 1.09005 * 110.67142 * 357.03597 * 3 2 1 5 5 O 1.44376 * 110.61891 * 234.07508 * 3 2 1 6 6 C 1.43738 * 106.97760 * 201.43923 * 5 3 2 7 7 C 1.54106 * 107.29454 * 26.50984 * 6 5 3 8 8 C 1.54818 * 104.18506 * 357.97376 * 7 6 5 9 9 H 1.08995 * 110.90480 * 97.34820 * 8 7 6 10 10 C 1.50700 * 110.90712 * 220.92125 * 8 7 6 11 11 O 1.21283 * 119.99803 * 118.54463 * 10 8 7 12 12 N 1.34777 * 119.99675 * 298.82339 * 10 8 7 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 8 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 15 15 C 1.50709 * 109.47273 * 89.99834 * 14 12 10 16 16 H 1.07999 * 119.99476 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47015 * 120.00082 * 19 17 15 22 22 H 1.48507 * 109.47126 * 239.99903 * 19 17 15 23 23 H 1.08001 * 120.00735 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.99311 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99311 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.87659 * 267.09072 * 6 5 3 27 27 H 1.08996 * 109.88362 * 145.93372 * 6 5 3 28 28 H 1.09003 * 110.48776 * 239.30186 * 7 6 5 29 29 H 1.08999 * 110.59861 * 116.70457 * 7 6 5 30 30 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 31 31 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 32 32 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 33 33 H 1.09000 * 109.46889 * 209.99487 * 14 12 10 34 34 H 1.09001 * 109.47460 * 330.00097 * 14 12 10 35 35 H 0.97000 * 120.00447 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3740 2.1476 -0.0527 5 8 3.0044 1.3488 -1.0942 6 6 4.0003 2.3274 -0.7526 7 6 4.0584 2.4043 0.7854 8 6 2.9647 1.4149 1.2563 9 1 3.3984 0.4477 1.5103 10 6 2.1950 1.9792 2.4225 11 8 1.0026 2.1777 2.3231 12 7 2.8327 2.2687 3.5741 13 6 4.2729 2.0290 3.6941 14 6 2.0855 2.8230 4.7057 15 6 1.5710 1.6984 5.5672 16 1 1.7795 0.6735 5.2983 17 6 0.8343 1.9782 6.6985 18 7 0.5801 3.2264 7.0257 19 14 0.1961 0.5844 7.7659 20 1 0.6141 -0.7161 7.1837 21 1 0.7528 0.7156 9.1364 22 1 -1.2864 0.6457 7.8258 23 1 -0.5401 -0.9352 0.0004 24 1 -0.5399 0.9354 0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 3.7214 3.2984 -1.1619 27 1 4.9701 2.0220 -1.1453 28 1 3.8309 3.4146 1.1258 29 1 5.0375 2.0917 1.1483 30 1 4.8169 2.9203 3.3815 31 1 4.5177 1.7989 4.7310 32 1 4.5557 1.1894 3.0591 33 1 2.7418 3.4621 5.2963 34 1 1.2452 3.4095 4.3341 35 1 0.0615 3.4233 7.8214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626878597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:15 Heat of formation + Delta-G solvation = -81.679382 kcal Electronic energy + Delta-G solvation = -17584.990931 eV Core-core repulsion = 14775.820605 eV Total energy + Delta-G solvation = -2809.170325 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49250 -39.49046 -36.66549 -34.85398 -34.76349 -33.22790 -29.94638 -29.30591 -27.36914 -25.61339 -23.74663 -22.83612 -21.07972 -20.09002 -18.73169 -18.08410 -17.39283 -17.11918 -16.73166 -16.38656 -15.94090 -15.38179 -14.69644 -14.56867 -14.37449 -14.22587 -13.78947 -13.50714 -13.46734 -13.09446 -12.89447 -12.70061 -12.55217 -12.33712 -12.23321 -11.98311 -11.85190 -11.68972 -10.76765 -10.66690 -10.59081 -10.33740 -9.43648 -8.24340 -6.39225 1.23365 1.35115 1.37613 1.49301 1.77586 2.25213 2.40909 2.98647 3.05514 3.48996 3.59334 3.75922 4.04004 4.08290 4.25742 4.29176 4.39893 4.45909 4.69626 4.75803 4.82904 4.86634 4.94968 4.97306 5.03814 5.07619 5.21334 5.54113 5.59714 5.75396 5.81885 5.91626 6.04173 6.67569 6.75724 7.25914 7.44020 8.82944 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.006793 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.646895 B = 4120.732729 C = 4659.912049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.165 4.165 3 C 0.127 3.873 4 H 0.058 0.942 5 O -0.382 6.382 6 C 0.044 3.956 7 C -0.139 4.139 8 C -0.126 4.126 9 H 0.127 0.873 10 C 0.507 3.493 11 O -0.589 6.589 12 N -0.606 5.606 13 C 0.076 3.924 14 C 0.260 3.740 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.282 1.282 23 H 0.123 0.877 24 H 0.084 0.916 25 H 0.132 0.868 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.025 0.975 34 H -0.003 1.003 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.304 -4.605 -12.612 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.183 4.183 3 C 0.069 3.931 4 H 0.076 0.924 5 O -0.302 6.302 6 C -0.032 4.032 7 C -0.177 4.177 8 C -0.148 4.148 9 H 0.145 0.855 10 C 0.295 3.705 11 O -0.470 6.470 12 N -0.337 5.337 13 C -0.066 4.066 14 C 0.138 3.862 15 C -0.581 4.581 16 H 0.071 0.929 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.208 1.208 23 H 0.141 0.859 24 H 0.103 0.897 25 H 0.149 0.851 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.016 0.984 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.634 -4.492 -12.703 16.564 hybrid contribution -0.806 -0.057 1.162 1.415 sum 8.829 -4.549 -11.542 15.227 Atomic orbital electron populations 1.24022 0.96072 1.02531 0.97415 1.22741 0.95965 0.97255 1.02320 1.21825 0.90495 0.96534 0.84222 0.92395 1.88877 1.38961 1.61182 1.41134 1.23383 0.93372 0.92662 0.93823 1.23071 0.99493 0.98927 0.96221 1.22809 0.97103 1.02175 0.92705 0.85539 1.20800 0.87342 0.78105 0.84212 1.90639 1.17395 1.55348 1.83590 1.48123 1.10505 1.62172 1.12914 1.22035 0.78671 1.02352 1.03528 1.18760 0.90878 0.93465 0.83087 1.21734 1.34266 0.93384 1.08701 0.92912 1.25858 0.95892 0.98379 0.99022 1.70054 1.40286 1.19722 1.26810 0.85373 0.77940 0.79008 0.78528 1.19121 1.19301 1.20768 0.85885 0.89719 0.85060 0.91864 0.86401 0.91081 0.86003 0.90678 0.91587 0.88972 0.95728 0.98443 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 14.33 67.78 0.97 -3.86 16 2 C -0.16 -4.85 9.24 25.65 0.24 -4.61 16 3 C 0.13 3.91 2.73 30.53 0.08 3.99 16 4 H 0.06 2.09 7.25 -2.38 -0.02 2.07 16 5 O -0.38 -10.33 11.21 -148.98 -1.67 -12.00 16 6 C 0.04 0.86 7.70 72.36 0.56 1.42 16 7 C -0.14 -2.91 5.09 31.59 0.16 -2.75 16 8 C -0.13 -3.68 1.97 -10.24 -0.02 -3.70 16 9 H 0.13 3.19 7.47 -2.39 -0.02 3.17 16 10 C 0.51 21.05 6.97 87.66 0.61 21.67 16 11 O -0.59 -30.43 15.38 -3.04 -0.05 -30.48 16 12 N -0.61 -25.43 2.86 -851.14 -2.43 -27.86 16 13 C 0.08 2.18 9.02 127.77 1.15 3.33 16 14 C 0.26 14.02 5.16 85.64 0.44 14.46 16 15 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.43 5.46 84.65 0.46 0.89 16 18 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 19 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 24 H 0.08 2.75 7.87 -2.91 -0.02 2.73 16 25 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16 29 H 0.12 1.69 7.35 -2.39 -0.02 1.67 16 30 H 0.07 1.72 7.94 -2.39 -0.02 1.70 16 31 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 32 H 0.09 1.99 5.99 -2.39 -0.01 1.98 16 33 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 34 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -74.13 294.45 4.12 -70.01 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.06 Total: 9.68 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.90 Total: -0.32 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.15 Total: -83.94 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.72 Total: -42.47 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.13 4.12 -70.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626878597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.665 kcal (2) G-P(sol) polarization free energy of solvation -74.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds