Wall clock time and date at job start Sun Mar 29 2020 22:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20763 * 119.99671 * 2 1 4 4 C 1.50698 * 120.00187 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47244 * 174.94983 * 4 2 1 6 6 C 1.50694 * 112.84986 * 300.60220 * 5 4 2 7 7 O 1.21288 * 120.00230 * 124.18634 * 6 5 4 8 8 N 1.34776 * 120.00119 * 304.18838 * 6 5 4 9 9 C 1.46498 * 120.00096 * 174.79973 * 8 6 5 10 10 C 1.50704 * 109.47243 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99621 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00061 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99600 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99774 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47272 * 89.99861 * 14 12 10 16 16 H 1.48508 * 109.46635 * 209.99565 * 14 12 10 17 17 H 1.48493 * 109.47053 * 329.99325 * 14 12 10 18 18 C 1.53783 * 113.61119 * 169.40533 * 5 4 2 19 19 C 1.53956 * 87.01664 * 220.04892 * 18 5 4 20 20 C 1.53779 * 113.61189 * 71.79880 * 5 4 2 21 21 H 1.08996 * 109.47373 * 270.00138 * 1 2 3 22 22 H 1.09001 * 109.47264 * 30.00048 * 1 2 3 23 23 H 1.09004 * 109.46936 * 150.00002 * 1 2 3 24 24 H 1.09002 * 109.46816 * 294.95287 * 4 2 1 25 25 H 1.09001 * 109.46785 * 54.94928 * 4 2 1 26 26 H 0.96997 * 119.99939 * 354.79159 * 8 6 5 27 27 H 1.08996 * 109.47227 * 299.99693 * 9 8 6 28 28 H 1.08999 * 109.47239 * 59.99885 * 9 8 6 29 29 H 0.97006 * 119.99772 * 180.02562 * 13 12 10 30 30 H 1.08993 * 113.61617 * 334.56455 * 18 5 4 31 31 H 1.08997 * 113.61160 * 105.47440 * 18 5 4 32 32 H 1.09005 * 113.53782 * 270.81441 * 19 18 5 33 33 H 1.09000 * 113.66717 * 139.93973 * 19 18 5 34 34 H 1.08999 * 113.61342 * 254.52670 * 20 5 4 35 35 H 1.09000 * 113.61744 * 25.43462 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7599 -1.0283 -0.1265 6 6 4.1123 -0.2811 -1.3868 7 8 4.7198 0.7666 -1.3209 8 7 3.7523 -0.7769 -2.5872 9 6 3.9932 0.0028 -3.8039 10 6 3.5033 -0.7703 -5.0012 11 1 3.0568 -1.7447 -4.8689 12 6 3.6242 -0.2331 -6.2653 13 7 3.1962 -0.9076 -7.3100 14 14 4.3958 1.4527 -6.4938 15 1 5.8607 1.3046 -6.6866 16 1 3.8036 2.1105 -7.6863 17 1 4.1363 2.2831 -5.2904 18 6 4.6379 -2.2662 0.1216 19 6 5.5979 -1.3333 0.8822 20 6 4.3847 -0.4250 1.1425 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 2.0667 -1.8360 0.9326 25 1 1.9311 -1.9152 -0.8405 26 1 3.3339 -1.6500 -2.6456 27 1 3.4590 0.9507 -3.7397 28 1 5.0613 0.1939 -3.9075 29 1 3.2816 -0.5298 -8.1994 30 1 4.1654 -3.0168 0.7551 31 1 5.0661 -2.6872 -0.7880 32 1 6.3565 -0.8770 0.2462 33 1 6.0137 -1.7767 1.7870 34 1 4.6087 0.6382 1.0559 35 1 3.8428 -0.6714 2.0556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635343576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:17 Heat of formation + Delta-G solvation = -63.539332 kcal Electronic energy + Delta-G solvation = -17611.736554 eV Core-core repulsion = 14803.352840 eV Total energy + Delta-G solvation = -2808.383714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67055 -38.60124 -36.96320 -34.23225 -32.37123 -31.46749 -29.33054 -27.84671 -25.52391 -24.26514 -22.28014 -20.75024 -19.56439 -18.82866 -16.83197 -16.19761 -15.75659 -15.63380 -15.03909 -14.89484 -14.59006 -14.18672 -13.79124 -13.39735 -12.94058 -12.49416 -12.44460 -12.39172 -12.17170 -12.01928 -11.86239 -11.48716 -10.99531 -10.81638 -10.71192 -10.43179 -10.15757 -9.94276 -9.47186 -9.36761 -9.01297 -8.75726 -8.06841 -6.20648 -4.22331 2.12968 3.27458 3.31067 3.34805 3.45115 3.92544 4.09593 4.35331 4.60352 4.77742 4.79405 4.92884 5.10595 5.15162 5.25403 5.30940 5.39241 5.54228 5.58229 5.69205 5.78195 5.86955 5.97353 6.01924 6.26907 6.34063 6.52687 6.87677 7.11603 7.29547 7.44004 7.68062 8.17808 8.57041 8.77222 9.04434 9.40626 10.91245 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.007285 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.193440 B = 3842.711330 C = 4227.940024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.342 3.658 3 O -0.433 6.433 4 C -0.154 4.154 5 C -0.099 4.099 6 C 0.529 3.471 7 O -0.541 6.541 8 N -0.709 5.709 9 C 0.222 3.778 10 C -0.542 4.542 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.893 5.893 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.261 1.261 18 C -0.125 4.125 19 C -0.141 4.141 20 C -0.112 4.112 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.393 0.607 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -4.257 16.761 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.215 3.785 3 O -0.305 6.305 4 C -0.192 4.192 5 C -0.102 4.102 6 C 0.313 3.687 7 O -0.418 6.418 8 N -0.358 5.358 9 C 0.100 3.900 10 C -0.579 4.579 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.701 3.299 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.163 4.163 19 C -0.178 4.178 20 C -0.150 4.150 21 H 0.109 0.891 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.226 0.774 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.568 -2.901 16.560 17.007 hybrid contribution -0.039 0.217 -0.439 0.492 sum -2.607 -2.684 16.120 16.549 Atomic orbital electron populations 1.22275 0.94646 1.04976 1.04069 1.24565 0.91879 0.90487 0.71528 1.90520 1.71585 1.34687 1.33691 1.22152 0.94068 0.98135 1.04844 1.21865 0.94114 0.98260 0.95967 1.19635 0.79522 0.85409 0.84111 1.90622 1.40675 1.23526 1.86965 1.46095 1.61385 1.21772 1.06515 1.19456 0.96370 0.92188 0.82004 1.21091 1.41897 1.05350 0.89605 0.90290 1.24784 0.94578 0.97624 0.95578 1.69881 1.46207 1.38163 0.98797 0.86838 0.80009 0.84586 0.78431 1.19827 1.20877 1.18505 1.23000 0.96924 0.95182 1.01150 1.22862 0.97122 0.97557 1.00292 1.22756 0.95969 1.01517 0.94724 0.89119 0.89761 0.89698 0.87742 0.87996 0.77366 0.95952 0.96261 0.92297 0.89297 0.90749 0.89853 0.91439 0.89606 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 10.25 36.01 0.37 -1.61 16 2 C 0.34 4.67 6.90 -29.03 -0.20 4.47 16 3 O -0.43 -8.08 15.14 5.86 0.09 -7.99 16 4 C -0.15 -1.75 4.94 -27.89 -0.14 -1.89 16 5 C -0.10 -1.44 0.59 -154.85 -0.09 -1.53 16 6 C 0.53 10.73 5.09 -10.99 -0.06 10.68 16 7 O -0.54 -13.29 15.76 5.41 0.09 -13.20 16 8 N -0.71 -14.96 5.46 -61.47 -0.34 -15.29 16 9 C 0.22 5.68 4.50 -5.19 -0.02 5.65 16 10 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 11 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 12 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 13 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 14 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 18 C -0.12 -1.48 7.24 -25.83 -0.19 -1.67 16 19 C -0.14 -1.79 7.81 -25.83 -0.20 -2.00 16 20 C -0.11 -1.56 6.25 -25.92 -0.16 -1.72 16 21 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.08 0.67 8.12 -51.93 -0.42 0.24 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.10 1.04 7.78 -51.93 -0.40 0.63 16 26 H 0.39 7.22 7.93 -40.82 -0.32 6.90 16 27 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 28 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -34.86 294.52 -6.00 -40.85 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.25 Total: 2.65 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.13 Total: -2.88 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.44 Total: -41.21 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.17 Total: -21.19 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.86 -6.00 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.686 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds